CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035092.1-P	Field mustard	nucleus	99.37	99.37
CDX88507	Canola	nucleus	87.66	92.95
CDX79294	Canola	nucleus	65.82	68.42
AT1G79110.1	Thale cress	nucleus	75.95	67.04
KRH43767	Soybean	nucleus	40.82	50.99
GSMUA_Achr7P00850_001	Banana	plastid	33.86	46.52
GSMUA_Achr4P23050_001	Banana	nucleus	27.53	46.28
VIT_19s0027g00740.t01	Wine grape	nucleus	44.62	45.63
CDY43390	Canola	cytosol	45.89	44.62
CDX94520	Canola	cytosol	32.59	44.02
CDY21311	Canola	cytosol	32.59	44.02
CDY09318	Canola	cytosol	32.59	44.02
CDY07541	Canola	cytosol	32.59	44.02
GSMUA_Achr5P02100_001	Banana	plastid	33.86	43.85
GSMUA_Achr2P13160_001	Banana	plastid	34.18	43.72
KRH13682	Soybean	nucleus	46.52	43.62
CDY24237	Canola	nucleus	44.62	43.52
GSMUA_Achr4P32070_001	Banana	nucleus	38.61	42.66
CDY64561	Canola	nucleus	44.3	41.18
GSMUA_Achr4P28300_001	Banana	nucleus	31.33	41.08
CDX82568	Canola	nucleus	43.99	40.88
GSMUA_Achr6P31690_001	Banana	nucleus	37.34	39.6
CDY51918	Canola	cytosol	35.76	39.37
CDY26402	Canola	cytosol	36.39	38.85
CDY71607	Canola	cytosol	37.34	38.56
CDY01615	Canola	cytosol	37.03	38.36
CDY34127	Canola	extracellular	7.28	38.33
CDY71192	Canola	cytosol	33.23	37.5
CDY13070	Canola	cytosol	32.28	36.56
GSMUA_Achr9P09830_001	Banana	nucleus	36.71	36.14
TraesCS3D01G441300.1	Wheat	mitochondrion	32.91	35.86
TraesCS7D01G431300.1	Wheat	mitochondrion	35.44	35.78
TraesCS3D01G441000.1	Wheat	mitochondrion	32.59	35.52
CDY46345	Canola	cytosol	31.33	35.11
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	33.54	34.98
HORVU4Hr1G003180.3	Barley	mitochondrion	33.86	34.85
TraesCS3A01G448500.1	Wheat	mitochondrion	32.28	34.81
CDY18062	Canola	cytosol	31.01	34.75
TraesCS3B01G484600.1	Wheat	cytosol	30.06	34.55
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	33.23	34.2
TraesCS4A01G293700.1	Wheat	mitochondrion	32.91	33.77
TraesCS4B01G019600.1	Wheat	mitochondrion	32.91	33.55
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	25.32	33.47
TraesCS7A01G442300.1	Wheat	mitochondrion	33.54	33.44
TraesCS7B01G340600.1	Wheat	mitochondrion	32.91	33.33
CDY23552	Canola	cytosol	22.78	33.18
TraesCS7B01G340700.1	Wheat	mitochondrion	32.59	33.01
TraesCS7A01G442100.1	Wheat	mitochondrion	32.59	32.8
TraesCS7B01G340500.1	Wheat	mitochondrion	32.59	32.7
HORVU7Hr1G100540.2	Barley	mitochondrion	31.33	32.57
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	31.96	32.17
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	33.54	32.12
TraesCS7A01G441900.1	Wheat	mitochondrion	31.96	31.96
TraesCS7D01G431200.1	Wheat	mitochondrion	31.01	31.82
EER91098	Sorghum	nucleus	35.44	31.55
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	25.63	29.89
TraesCS6A01G120700.1	Wheat	nucleus	24.37	29.28
HORVU6Hr1G021880.1	Barley	plastid	24.05	29.12
HORVU6Hr1G021960.1	Barley	plastid	24.05	29.12
TraesCS6D01G110700.1	Wheat	nucleus	23.73	28.52
TraesCS6B01G149100.1	Wheat	nucleus	23.73	28.52
Zm00001d033419_P001	Maize	plastid	24.37	27.5
CDX69109	Canola	nucleus	17.41	26.83
CDY52651	Canola	cytosol	18.67	26.7
CDY40647	Canola	cytosol	19.62	26.38
CDX72513	Canola	cytosol	19.3	26.07
CDX73168	Canola	cytosol	20.25	25.5
CDY15019	Canola	cytosol	20.25	25.5
CDY17506	Canola	cytosol, nucleus, plastid	20.25	25.3
CDX76311	Canola	cytosol	19.62	24.51
CDY43447	Canola	nucleus	22.78	23.84
CDY33511	Canola	nucleus	22.47	23.43
CDY40841	Canola	cytosol	22.15	23.41
CDX77733	Canola	nucleus	22.15	23.33
CDY17103	Canola	cytosol	21.52	22.97
CDY17048	Canola	cytosol	22.47	22.83
CDX90458	Canola	cytosol	21.84	22.7
CDY03162	Canola	cytosol	22.78	22.36
CDY06767	Canola	cytosol	21.2	22.04
CDY09609	Canola	cytosol	17.09	21.86
CDY51856	Canola	cytosol	20.89	21.78
CDX93396	Canola	cytosol	22.47	21.13
CDY20963	Canola	nucleus	22.47	21.01
CDY37172	Canola	cytosol	19.94	20.86
CDY20611	Canola	nucleus	22.47	20.82
CDY37958	Canola	cytosol, plastid	22.15	20.65
CDY24542	Canola	nucleus	21.2	20.49

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DED2
EnsemblPlants:CDX87407	ProteinID:CDX87407	ProteinID:CDX87407.1	ncoils:Coil	InterPro:E3ligase_BOI_like	EnsemblPlantsGene:GSBRNA2T00146383001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647
PANTHER:PTHR42647:SF7	UniPathway:UPA00144	UniParc:UPI0004EE7998	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA07g34660D

Coordinates

chrLK031850:-:492680..494030

Molecular Weight (calculated)

35121.3 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.545

Length

316 amino acids

Sequence
(BLAST)

001: MAVDAHHLLL STPQLFSNRE LMMHNNNDNA TMEPTTNGGF CTNGYGVVSP FSATDDSPPP PLLHHMYGAS CTADSFANYY ADGANLQTRK RSRDSRSDYY
101: PHHQSTVSPS YVTPYSFLGQ DIDLSSHISQ QQHDIDRFVS LHMERVKFEI QEKRKRQART IVEAIEHGLA KRLRVKDEER ERIGKINHAL EERVKSLSIE
201: NQIWRDLAQS NEATANNLRA NLEEVLAQVK DITGAGLANC DDDAQSCCGS SSGEETVRRT VVAKGRMCRS CGEEESCVLV LPCRHLCLCG VCGSSVHTCP
301: ICRSPKNASV HVNMSP

Best Arabidopsis Sequence Match ( AT1G79110.2 )
(BLAST)

001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHMERVKYE IEEKRKRQAR TIMEAIEQGL VKRLRVKEEE
201: RERIGKVNHA LEERVKSLSI ENQIWRDLAQ TNEATANHLR TNLEHVLAQV KDVSRGAGLE KNMNEEDDAE SCCGSSCGGG GEETVRRRVG LEREAQDKAE
301: RRRRRMCRNC GEEESCVLLL PCRHLCLCGV CGSSVHTCPI CTSPKNASVH VNMSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.