Factsheet for GSMUA_Achr6P31690_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P11160_001
GSMUA_Achr1P23560_001
GSMUA_Achr3P00510_001
GSMUA_Achr3P05670_001
GSMUA_Achr3P27880_001
GSMUA_Achr4P17120_001
GSMUA_Achr4P20600_001
GSMUA_Achr4P22890_001
GSMUA_Achr5P04870_001
GSMUA_Achr5P14780_001
GSMUA_Achr5P21910_001
GSMUA_Achr6P03810_001
GSMUA_Achr7P01240_001
GSMUA_Achr7P15930_001
GSMUA_Achr7P24090_001
GSMUA_Achr8P09080_001
GSMUA_Achr9P22950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	GSMUA_Achr10P...	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr1P23560_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P00510_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P05670_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr3P27880_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr4P20600_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr5P04870_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr5P21910_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr6P03810_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr7P15930_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr9P22950_001	AT2G24570.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr1P11160_001	AT2G33210.1	21798944
AT4G19700.1	GSMUA_Achr8P09080_001	AT2G43370.1	21798944
AT4G19700.1	GSMUA_Achr7P24090_001	AT3G13860.1	21798944
AT4G19700.1	GSMUA_Achr4P17120_001	AT4G02770.1	21798944
AT4G19700.1	GSMUA_Achr5P14780_001	AT4G02770.1	21798944
AT4G19700.1	GSMUA_Achr10P...	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr1P23560_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P00510_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P05670_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr3P27880_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr4P20600_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr5P04870_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr5P21910_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr6P03810_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr7P15930_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr9P22950_001	AT4G31550.1	21798944
AT4G19700.1	GSMUA_Achr11P...	AT5G08330.1	21798944
AT4G19700.1	GSMUA_Achr4P22890_001	AT5G38640.1	21798944
AT4G19700.1	GSMUA_Achr7P01240_001	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09830_001	Banana	nucleus	74.83	69.47
GSMUA_Achr4P32070_001	Banana	nucleus	62.75	65.38
GSMUA_Achr7P00850_001	Banana	plastid	49.33	63.91
GSMUA_Achr2P13160_001	Banana	plastid	51.68	62.35
GSMUA_Achr5P02100_001	Banana	plastid	47.99	58.61
GSMUA_Achr4P23050_001	Banana	nucleus	35.91	56.91
GSMUA_Achr4P28300_001	Banana	nucleus	45.97	56.85
VIT_19s0027g00740.t01	Wine grape	nucleus	43.96	42.39
KRH43767	Soybean	nucleus	34.56	40.71
PGSC0003DMT400062617	Potato	nucleus	38.93	38.67
VIT_10s0042g01070.t01	Wine grape	nucleus	38.93	38.28
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	41.28	38.08
TraesCS3D01G441000.1	Wheat	mitochondrion	36.58	37.59
Bra035092.1-P	Field mustard	nucleus	39.6	37.34
CDX87407	Canola	nucleus	39.6	37.34
CDX88507	Canola	nucleus	37.25	37.25
TraesCS3D01G441300.1	Wheat	mitochondrion	36.24	37.24
HORVU4Hr1G003180.3	Barley	mitochondrion	37.92	36.81
KRH13682	Soybean	nucleus	41.61	36.8
Solyc02g031710.2.1	Tomato	nucleus	38.26	36.77
TraesCS3B01G484600.1	Wheat	cytosol	33.89	36.73
CDY21311	Canola	cytosol	28.52	36.32
CDY09318	Canola	cytosol	28.52	36.32
CDY07541	Canola	cytosol	28.52	36.32
CDX94520	Canola	cytosol	28.52	36.32
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	36.91	36.3
CDX79294	Canola	nucleus	36.91	36.18
TraesCS3A01G448500.1	Wheat	mitochondrion	35.57	36.18
KRH36722	Soybean	nucleus	37.58	36.13
KRH50476	Soybean	cytosol, nucleus, plastid	38.59	35.94
KRG89416	Soybean	nucleus	37.58	35.67
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	28.52	35.56
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	36.58	35.5
TraesCS7D01G431300.1	Wheat	mitochondrion	37.25	35.46
TraesCS7B01G340600.1	Wheat	mitochondrion	36.91	35.26
TraesCS7B01G340700.1	Wheat	mitochondrion	36.91	35.26
KRH11729	Soybean	nucleus	36.91	35.14
CDY26402	Canola	cytosol	34.9	35.14
AT3G12920.1	Thale cress	nucleus	39.26	34.93
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	38.59	34.85
TraesCS4B01G019600.1	Wheat	mitochondrion	36.24	34.84
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	34.56	34.8
TraesCS7A01G442300.1	Wheat	mitochondrion	36.91	34.7
TraesCS7B01G340500.1	Wheat	mitochondrion	36.58	34.6
TraesCS7A01G442100.1	Wheat	mitochondrion	36.24	34.39
AT5G45100.1	Thale cress	cytosol	33.89	34.35
HORVU7Hr1G100540.2	Barley	mitochondrion	34.9	34.21
CDY43390	Canola	cytosol	37.25	34.15
Bra039354.1-P	Field mustard	cytosol	37.25	34.15
TraesCS7D01G431200.1	Wheat	mitochondrion	35.23	34.09
EER91098	Sorghum	nucleus	40.6	34.08
AT1G79110.1	Thale cress	nucleus	40.94	34.08
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	35.91	34.08
CDY24237	Canola	nucleus	36.91	33.95
Solyc02g069180.2.1	Tomato	plastid	32.21	33.92
AT4G19700.1	Thale cress	cytosol	34.56	33.88
TraesCS7A01G441900.1	Wheat	mitochondrion	35.91	33.86
Bra034718.1-P	Field mustard	nucleus	38.26	33.83
Bra013423.1-P	Field mustard	nucleus	33.56	33.78
TraesCS4A01G293700.1	Wheat	mitochondrion	34.9	33.77
Bra001477.1-P	Field mustard	nucleus	37.58	32.94
CDY01615	Canola	cytosol	33.56	32.79
CDY51918	Canola	cytosol	31.54	32.75
CDY64561	Canola	nucleus	37.25	32.65
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	29.53	32.47
Bra012532.1-P	Field mustard	nucleus	33.22	32.35
CDX82568	Canola	nucleus	36.91	32.35
CDY71607	Canola	cytosol	33.22	32.35
HORVU6Hr1G021960.1	Barley	plastid	27.85	31.8
HORVU6Hr1G021880.1	Barley	plastid	27.85	31.8
TraesCS6D01G110700.1	Wheat	nucleus	27.18	30.8
TraesCS6B01G149100.1	Wheat	nucleus	27.18	30.8
TraesCS6A01G120700.1	Wheat	nucleus	26.85	30.42
CDY71192	Canola	cytosol	28.19	30.0
CDY13070	Canola	cytosol	27.85	29.75
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	27.85	29.75
CDY23552	Canola	cytosol	21.14	29.03
CDY46345	Canola	cytosol	26.85	28.37
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	26.85	28.37
CDY18062	Canola	cytosol	26.85	28.37
Zm00001d033419_P001	Maize	plastid	26.17	27.86
GSMUA_Achr6P11810_001	Banana	nucleus	27.18	26.64
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	25.5	26.39
GSMUA_Achr2P21330_001	Banana	nucleus	25.17	26.13
GSMUA_Achr11P...	Banana	nucleus	26.85	25.08
GSMUA_Achr2P12040_001	Banana	plastid	21.81	24.16
GSMUA_Achr10P...	Banana	nucleus	24.5	22.96
GSMUA_Achr6P16260_001	Banana	nucleus	25.5	22.55
GSMUA_Achr4P30100_001	Banana	plastid	22.15	21.64
GSMUA_Achr10P...	Banana	nucleus	22.15	20.75
GSMUA_Achr2P18250_001	Banana	nucleus	22.82	20.61
GSMUA_Achr6P08300_001	Banana	plastid	23.83	20.52
GSMUA_Achr1P00560_001	Banana	nucleus	19.8	20.42
GSMUA_Achr4P21690_001	Banana	nucleus	21.81	20.06
GSMUA_Achr8P14860_001	Banana	nucleus	21.14	18.69
GSMUA_Achr6P10180_001	Banana	plastid	20.81	17.87
GSMUA_Achr11P...	Banana	nucleus	21.14	16.84

Protein Annotations

EnsemblPlants:GSMUA_Achr6P31690_001	EnsemblPlants:GSMUA_Achr6T31690_001	EnsemblPlantsGene:GSMUA_Achr6G31690_001	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000296D7FC	UniProt:M0TBW4	MapMan:35.1

Description

protein binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G31690_001]

Coordinates

chr6:-:31398998..31400094

Molecular Weight (calculated)

32643.9 Da

IEP (calculated)

6.098

GRAVY (calculated)

-0.191

Length

298 amino acids

Sequence
(BLAST)

001: MAVEAHHLHL FPSQLLRNRE IINGVEDQSG FYNTQLGFFA PASGATASSY IPFCSSPSAP MTAATTSESG LTFNNFHAAM ASRKRPRDWD RQLSFLGQDL
101: SSHIQQQMLD VDRIILHHAE KVRVELMEGL KRFLRGILAA VEEGLSKRLE SKEEEIARVS KLNWALEERI KTLCVENQMW RDLARSNEAA AQVLRTNLEQ
201: ALAEAQVKAE EEAAAIAADD AESCCFGDNA GGENRDPAAA EAKRSGLRRV CRCCQAQEPS VLLLPCRHLC VCAACGPAVV VCPICNCNSN GSVLVNMS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.