Factsheet for GSMUA_Achr6P11810_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	66.78	70.49
GSMUA_Achr2P21330_001	Banana	nucleus	58.22	61.67
GSMUA_Achr11P...	Banana	nucleus	56.25	53.6
GSMUA_Achr10P...	Banana	nucleus	51.64	49.37
GSMUA_Achr6P16260_001	Banana	nucleus	49.34	44.51
GSMUA_Achr6P08300_001	Banana	plastid	43.75	38.44
GSMUA_Achr4P23050_001	Banana	nucleus	21.38	34.57
GSMUA_Achr7P00850_001	Banana	plastid	25.33	33.48
GSMUA_Achr4P28300_001	Banana	nucleus	25.33	31.95
GSMUA_Achr2P13160_001	Banana	plastid	25.33	31.17
GSMUA_Achr5P02100_001	Banana	plastid	24.34	30.33
GSMUA_Achr4P32070_001	Banana	nucleus	27.63	29.37
GSMUA_Achr2P12040_001	Banana	plastid	24.67	27.88
GSMUA_Achr6P31690_001	Banana	nucleus	26.64	27.18
GSMUA_Achr1P00560_001	Banana	nucleus	25.33	26.64
GSMUA_Achr10P...	Banana	nucleus	26.32	25.16
GSMUA_Achr4P21690_001	Banana	nucleus	26.64	25.0
GSMUA_Achr9P09830_001	Banana	nucleus	26.32	24.92
GSMUA_Achr4P30100_001	Banana	plastid	24.01	23.93
GSMUA_Achr6P10180_001	Banana	plastid	26.64	23.34
GSMUA_Achr2P18250_001	Banana	nucleus	24.67	22.73
GSMUA_Achr11P...	Banana	nucleus	27.3	22.19
GSMUA_Achr8P14860_001	Banana	nucleus	24.34	21.96

Protein Annotations

EnsemblPlants:GSMUA_Achr6P11810_001	EnsemblPlants:GSMUA_Achr6T11810_001	EnsemblPlantsGene:GSMUA_Achr6G11810_001	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002964C5E	UniProt:M0T679
MapMan:35.1	:	:	:	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G11810_001]

Coordinates

chr6:-:7817705..7822011

Molecular Weight (calculated)

33507.0 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.466

Length

304 amino acids

Sequence
(BLAST)

001: MEPMIETGVL GDAGKQEHQI LNAGVGFSGR QSEFTCNASG SRKRAREDSM ALPILHNPAL SPLIPIPGVL LQSRSLESGA TSTSGRHVPS SQAVSPVRDL
101: VSLLLQQNLE IDALVRVQSE RLRTGLEEAR KRHCRALLSM LEQQAAKRLM EKEAELETAS RRNAELEEHV RQLSEENQMW FTMAKNNEAI ACGLRTSLEQ
201: ALLQGASAAA GHERCGDGDG GGAAFPADDA QSCCFEVQER RKACKACGER DVCVLLLPCR HVCVCKDCES KTDTCPVCGS TKNAYLQVFI ERERERERRK
301: RKYL

Best Arabidopsis Sequence Match ( AT1G10650.2 )
(BLAST)

001: MIRPNKRGRE AESISNNIQR QQQKLQMSLN YNYNNTSVRE EVPKENLVST GLRLSYDDDE HNSSVTSASG SILAASPIFQ SLDDSLRIDL HRQKDEFDQF
101: IKIQAAQMAK GVRDMKQRHI ASFLTTLEKG VSKKLQEKDH EINDMNKKNK ELVERIKQVA MEAQNWHYRA KYNESVVNVL KANLQQAMSH NNSVIAAADQ
201: GKEGFGDSEI DDAASSYIDP NNNNNNNMGI HQRMRCKMCN VKEVSVLIVP CRHLSLCKEC DVFTKICPVC KSLKSSCVQV FFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.