Factsheet for GSMUA_Achr6P08300_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	47.4	51.57
GSMUA_Achr6P16260_001	Banana	nucleus	45.66	46.88
GSMUA_Achr2P21330_001	Banana	nucleus	37.28	44.95
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus, plastid	36.99	44.44
GSMUA_Achr6P11810_001	Banana	nucleus	38.44	43.75
GSMUA_Achr11P...	Banana	nucleus	39.31	42.63
Zm00001d010503_P001	Maize	cytosol, mitochondrion	13.01	34.88
Zm00001d026161_P001	Maize	cytosol	13.87	34.04
TraesCS2A01G290000.1	Wheat	cytosol	31.79	33.95
EES12084	Sorghum	cytosol, nucleus, plastid	28.32	33.45
TraesCS2B01G306500.1	Wheat	cytosol	31.21	33.33
TraesCS2D01G287900.1	Wheat	cytosol	30.64	33.12
Os04t0402500-00	Rice	cytosol	30.06	32.91
Os04t0403200-01	Rice	nucleus	32.95	32.85
Zm00001d052640_P001	Maize	cytosol, extracellular, nucleus	28.03	32.77
Zm00001d004743_P001	Maize	plastid	15.61	32.73
Zm00001d025310_P001	Maize	cytosol	30.35	32.71
GSMUA_Achr7P00850_001	Banana	plastid	21.39	32.17
OQU81469	Sorghum	cytosol	31.21	32.05
TraesCS2D01G288000.1	Wheat	cytosol	29.77	31.89
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	30.35	31.82
TraesCS2A01G290100.1	Wheat	cytosol	29.48	31.58
OQU83596	Sorghum	cytosol, extracellular	28.03	31.39
GSMUA_Achr4P23050_001	Banana	nucleus	17.05	31.38
TraesCS2B01G306600.1	Wheat	cytosol	28.9	30.96
Zm00001d025319_P001	Maize	cytosol	27.46	30.74
Zm00001d003850_P001	Maize	extracellular	29.19	30.24
OQU83597	Sorghum	cytosol	29.19	29.79
Zm00001d052639_P001	Maize	extracellular	28.9	29.59
GSMUA_Achr2P13160_001	Banana	plastid	21.1	29.55
EES10713	Sorghum	cytosol	29.48	29.31
EES05161	Sorghum	plastid	28.61	29.2
GSMUA_Achr4P28300_001	Banana	nucleus	19.65	28.22
Os11t0542100-01	Rice	cytosol	26.59	28.13
GSMUA_Achr5P02100_001	Banana	plastid	19.36	27.46
Zm00001d016648_P001	Maize	cytosol	24.57	27.42
OQU81471	Sorghum	mitochondrion	29.77	27.25
OQU85032	Sorghum	cytosol	29.19	27.08
GSMUA_Achr4P32070_001	Banana	nucleus	22.25	26.92
GSMUA_Achr2P12040_001	Banana	plastid	19.65	25.28
GSMUA_Achr2P18250_001	Banana	nucleus	23.41	24.55
GSMUA_Achr1P00560_001	Banana	nucleus	20.23	24.22
GSMUA_Achr6P31690_001	Banana	nucleus	20.52	23.83
GSMUA_Achr4P21690_001	Banana	nucleus	22.25	23.77
GSMUA_Achr4P30100_001	Banana	plastid	19.65	22.3
GSMUA_Achr9P09830_001	Banana	nucleus	20.52	22.12
GSMUA_Achr10P...	Banana	nucleus	20.23	22.01
GSMUA_Achr8P14860_001	Banana	nucleus	20.81	21.36
GSMUA_Achr6P10180_001	Banana	plastid	20.81	20.75
GSMUA_Achr11P...	Banana	nucleus	21.39	19.79
Os02t0246101-00	Rice	cytosol	9.54	19.08
Os11t0543100-01	Rice	cytosol	9.54	16.58
Zm00001d003613_P002	Maize	nucleus	18.5	14.75

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08300_001	EnsemblPlants:GSMUA_Achr6T08300_001	EnsemblPlantsGene:GSMUA_Achr6G08300_001	Gene3D:1.10.1170.10	Gene3D:1.10.533.10	InterPro:IPR001841
InterPro:Znf_RING	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	PFscan:PS50089	SEG:seg
UniParc:UPI0002967579	UniProt:M0T579	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08300_001]

Coordinates

chr6:+:5523740..5530506

Molecular Weight (calculated)

38681.3 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.399

Length

346 amino acids

Sequence
(BLAST)

001: MILQNTSLSS LAGAAVASTT GSKKSSSINI FFPYLELFPE VLLPIHRMYI FDRRAGNDVM EELHLVQDQR KMLGVYTGRP GGVNDGTVFS DPNSELSCNA
101: SGPRKRPREA ELLVALQQPS QDYKLNLESR LRYPNLMNRL VPGRPVSLLT QDLVSHLLTQ EIEIDALVRH QSERLRGGLN EAWRSRCWTL LQRGEQHAAK
201: RLREKDVELE KARRRNSELE ERIRQVSAEI QMWSSVAKNH ETVAANLQAS LEQVLREAAA VPEPQEGYGD TDDDAHSGSF ADAPAPLEVD ARRRRKGTCQ
301: ACGHGKACVL LLPCRHLCLC KVCESTVDAC PVCHSAKNCF IRVFIS

Best Arabidopsis Sequence Match ( AT1G79110.3 )
(BLAST)

001: MNNNTMEPTS GGFCNNNQTG YGVVSPFSVP NHTSTTTTAT PPLLHVYGGS DTIPTTAGYY ADGATNLDCE FFPLPTRKRS RDSSRSNYHH LLLQNPRSSS
101: CVNAATTTTT TTLFSFLGQD IDISSHMNQQ QHEIDRFVSL HMERVKYEIE EKRKRQARTI MEAIEQGLVK RLRVKEEERE RIGKVNHALE ERVKSLSIEN
201: QIWRDLAQTN EATANHLRTN LEHVLAQVKD VSRGAGLEKN MNEEDDAESC CGSSCGGGGE ETVRRRVGLE REAQDKAERR RRRMCRNCGE EESCVLLLPC
301: RHLCLCGVCG SSVHTCPICT SPKNASVHVN MSS

Arabidopsis Description

BRG2Probable BOI-related E3 ubiquitin-protein ligase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.