Factsheet for TraesCS2D01G288000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G290100.1	Wheat	cytosol	97.21	97.21
TraesCS2B01G306600.1	Wheat	cytosol	95.36	95.36
Os04t0402500-00	Rice	cytosol	58.2	59.49
TraesCS2D01G287900.1	Wheat	cytosol	56.97	57.5
EES12084	Sorghum	cytosol, nucleus, plastid	45.2	49.83
OQU81469	Sorghum	cytosol	51.7	49.55
Zm00001d025310_P001	Maize	cytosol	48.92	49.22
Zm00001d003852_P001	Maize	cytosol, nucleus, plastid	49.23	48.18
OQU81471	Sorghum	mitochondrion	49.85	42.59
GSMUA_Achr10P...	Banana	nucleus	34.06	34.59
GSMUA_Achr6P16260_001	Banana	nucleus	34.06	32.64
GSMUA_Achr6P08300_001	Banana	plastid	31.89	29.77
TraesCS3D01G441000.1	Wheat	mitochondrion	26.01	28.97
TraesCS3D01G441300.1	Wheat	mitochondrion	26.01	28.97
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	25.7	27.39
TraesCS7D01G431300.1	Wheat	mitochondrion	26.01	26.84
TraesCS6D01G243000.1	Wheat	cytosol	26.93	26.05
TraesCS7D01G431200.1	Wheat	mitochondrion	24.46	25.65
TraesCS1D01G217800.1	Wheat	cytosol	25.39	25.55
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	24.46	25.16
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	21.05	25.09
TraesCS6D01G110700.1	Wheat	nucleus	20.12	24.71
TraesCS4D01G215600.1	Wheat	plastid	22.91	21.83

Protein Annotations

EnsemblPlants:TraesCS2D01G288000.1	EnsemblPlantsGene:TraesCS2D01G288000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	PFAM:PF13920	PFscan:PS50089
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:368935115..368936202

Molecular Weight (calculated)

34180.4 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.161

Length

323 amino acids

Sequence
(BLAST)

001: MAVQAQHLSH SFPHDLHAYN SVSALEDEMT GGSLFFPDNL KRGPELEGVG NTLFGDVPRV DPTWHDSITR SHGFVQRKRA RVVPEAPSYL ENQRGQGLVP
101: VGDVLTRAVG SGTASTSGRM INAAGPPQDL LSQLYRQGME IDAVLRLETD RMRAGLEEAR QEHVRALVSA AERAAARRLR AAEAALELAR CRNAKLSERL
201: TQICAEGQAW IRVAKSHEAV AAGLQATLDQ LLQSPCAAVA ATGADGDGDA EDARSCCFET PAGDDAAASK ASAAACRACG EGESCVLLLP CRHLCLCSAC
301: DAAVDTCPLC ATTKNASLHV LLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.