CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025310_P001	Maize	cytosol	65.61	77.26
OQU81469	Sorghum	cytosol	53.44	59.94
EES12084	Sorghum	cytosol, nucleus, plastid	44.44	57.34
Os04t0402500-00	Rice	cytosol	46.56	55.7
EES10713	Sorghum	cytosol	48.94	53.16
TraesCS2D01G288000.1	Wheat	cytosol	42.59	49.85
TraesCS2A01G290100.1	Wheat	cytosol	42.59	49.85
TraesCS2B01G306600.1	Wheat	cytosol	41.01	47.99
EES05161	Sorghum	plastid	42.33	47.2
OQU83596	Sorghum	cytosol, extracellular	34.13	41.75
OQU85032	Sorghum	cytosol	40.48	41.02
OQU83597	Sorghum	cytosol	31.75	35.4
GSMUA_Achr10P...	Banana	nucleus	29.1	34.59
GSMUA_Achr6P16260_001	Banana	nucleus	29.1	32.64
GSMUA_Achr6P08300_001	Banana	plastid	27.25	29.77
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	24.34	26.44
EER91098	Sorghum	nucleus	23.28	24.79
EES05709	Sorghum	nucleus	23.02	24.65
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	21.69	22.47
EER95135	Sorghum	plastid	16.93	18.99

Protein Annotations

EnsemblPlants:OQU81471	EnsemblPlantsGene:SORBI_3006G063100	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil
PANTHER:PTHR42647	PANTHER:PTHR42647:SF2	ProteinID:KXG26198.1	ProteinID:KXG26199.1	ProteinID:OQU81471	ProteinID:OQU81471.1
SEG:seg	UniParc:UPI00081AD3AF	UniProt:A0A1B6PKK5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:-:42083955..42085548

Molecular Weight (calculated)

39590.3 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.065

Length

378 amino acids

Sequence
(BLAST)

001: MPLLPLALLT QRVPNAFAVL AMAVQARHFP HNSLAPAAGA SLFLDAYAGR VPAPAPIGDA RTVLNDDFPR SDLAWPCNHG RFLPRKRPRL EAADQAQAAL
101: AAGGDLFQDQ RVGMRMPPAC TERLLQPAVP PPFVDVQVQG RAVGSGAAST SGRMGNGATP PAVVSLELLP SWTHRHGVEI DALVRLEAER MRAALKEARR
201: RHARALLAAV ARAASGSGRL RASEADLERA LRRNAELEEK ARQAGAECQA WVGVARSHEA VAAGLRATLD QVLLRSSPCG AGARAPAAGG GCQAEDAQLC
301: CFEAHATEDD DADDGACACA SSTSRSKSLA CKSCGGGEAC VLLLPCRHLC LCRVCEDAVD ACPVCANTKN GSLHVLFS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.