CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	73.42	75.28
Os02t0130300-02	Rice	cytosol, nucleus, plastid	64.11	68.22
TraesCSU01G113400.1	Wheat	nucleus	60.27	62.68
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	58.9	61.6
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	58.36	60.68
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	58.36	57.72
CDY34127	Canola	extracellular	7.12	43.33
KRH69583	Soybean	nucleus	36.99	40.06
VIT_01s0127g00360.t01	Wine grape	nucleus	38.63	39.94
KRH74575	Soybean	cytosol	36.71	39.76
PGSC0003DMT400035059	Potato	nucleus	36.16	39.76
AT1G10650.1	Thale cress	nucleus	35.07	37.76
Solyc05g005210.2.1	Tomato	nucleus	34.25	37.43
CDY24542	Canola	nucleus	32.6	36.39
Bra031495.1-P	Field mustard	nucleus	32.6	36.39
Bra019910.1-P	Field mustard	nucleus, plastid	30.14	36.18
AT1G60610.4	Thale cress	nucleus	33.7	36.18
CDY20963	Canola	nucleus	33.15	35.8
Bra018428.1-P	Field mustard	nucleus	33.15	35.8
CDY20611	Canola	nucleus	33.42	35.78
CDY37958	Canola	cytosol, plastid	33.15	35.69
CDX93396	Canola	cytosol	32.6	35.42
EER95135	Sorghum	plastid	25.48	27.6
EES12084	Sorghum	cytosol, nucleus, plastid	18.9	23.55
EES05709	Sorghum	nucleus	21.92	22.66
EES10713	Sorghum	cytosol	21.37	22.41
OQU81469	Sorghum	cytosol	20.27	21.96
EES05161	Sorghum	plastid	20.27	21.83
OQU81471	Sorghum	mitochondrion	22.47	21.69
OQU83596	Sorghum	cytosol, extracellular	18.36	21.68
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	20.55	21.55
OQU83597	Sorghum	cytosol	20.0	21.53
OQU85032	Sorghum	cytosol	19.45	19.03
EER91098	Sorghum	nucleus	16.99	17.46

Protein Annotations

EnsemblPlants:KXG29382	EnsemblPlantsGene:SORBI_3004G028800	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF9	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	ProteinID:KXG29381.1	ProteinID:KXG29382	ProteinID:KXG29382.1	SEG:seg
UniParc:UPI0007F30CF8	UniProt:A0A194YMF5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:2285658..2289368

Molecular Weight (calculated)

39520.5 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.461

Length

365 amino acids

Sequence
(BLAST)

001: MDGEAFRMGG AHFAAAYPSG AAMEDPNQSQ NQNQSQFLFS AKAAPLQLFG SAAVPTVGPA GYCNYSGNAH LPVMNQARTS NIDTGTEKLL KLQMSLNDYH
101: QQNADRLARV GNPSAVSTGL RLSYEDDEHN SSITSGSASM TSLPTTMSSV DDLMAELDKE NREISYYLRL QAEQIGKQMK EVNQRRMISF LANLERAVGK
201: KLREKELEAE AMNRKSKELN EQIRQVAMEV QSWQSAAMYN QSVANSLKTR LMQVVAQSTN LTREGTGDSE EADNAAYSQN PNARAGAAHE GFFQSDLLGG
301: GGGGRATTST ATIGLGACRW CGGKEASVLV MPCRHLCLCI DCERVSDVCP VCRFPKSGSV EINMS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.