Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031495.1-P | Field mustard | nucleus | 79.41 | 82.57 |
| CDY24542 | Canola | nucleus | 79.41 | 82.57 |
| AT1G10650.1 | Thale cress | nucleus | 70.29 | 70.5 |
| KRH74575 | Soybean | cytosol | 53.82 | 54.3 |
| KRH69583 | Soybean | nucleus | 53.53 | 54.01 |
| PGSC0003DMT400035059 | Potato | nucleus | 50.88 | 52.11 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 53.53 | 51.56 |
| Solyc05g005210.2.1 | Tomato | nucleus | 50.0 | 50.9 |
| TraesCSU01G113400.1 | Wheat | nucleus | 35.0 | 33.9 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 36.18 | 33.7 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 33.82 | 33.53 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 34.41 | 33.33 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 34.12 | 33.24 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 34.71 | 33.15 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 34.41 | 31.71 |
| AT1G45976.1 | Thale cress | cytosol | 27.35 | 28.62 |
| AT1G32740.1 | Thale cress | nucleus | 23.82 | 25.96 |
| AT4G17680.1 | Thale cress | nucleus | 22.35 | 24.2 |
| AT5G47050.1 | Thale cress | nucleus | 20.29 | 23.0 |
| AT5G45100.1 | Thale cress | cytosol | 18.82 | 21.77 |
| AT4G19700.1 | Thale cress | cytosol | 18.82 | 21.05 |
| AT3G12920.1 | Thale cress | nucleus | 20.59 | 20.9 |
| AT4G35070.1 | Thale cress | cytosol | 15.29 | 19.62 |
| AT1G79110.1 | Thale cress | nucleus | 19.12 | 18.16 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:842355 | ProteinID:AEE33703.1 | ProteinID:AEE33704.1 | ProteinID:AEE33705.1 |
| EMBL:AK229278 | ProteinID:ANM59831.1 | ProteinID:ANM59832.1 | ArrayExpress:AT1G60610 | EnsemblPlantsGene:AT1G60610 | RefSeq:AT1G60610 |
| TAIR:AT1G60610 | RefSeq:AT1G60610-TAIR-G | EnsemblPlants:AT1G60610.4 | Unigene:At.43636 | EMBL:BT028996 | ncoils:Coil |
| EMBL:DQ059101 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001117519.1 | RefSeq:NP_001322160.1 |
| RefSeq:NP_001322161.1 | RefSeq:NP_176260.1 | RefSeq:NP_974055.1 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 | UniProt:Q4TU35 | UniParc:UPI00000483C1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
Coordinates
chr1:-:22327842..22330300
Molecular Weight (calculated)
38336.3 Da
IEP (calculated)
6.923
GRAVY (calculated)
-0.616
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.