Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40647 | Canola | cytosol | 67.55 | 76.17 |
| CDY15019 | Canola | cytosol | 72.08 | 76.1 |
| CDX73168 | Canola | cytosol | 72.08 | 76.1 |
| Bra034672.1-P | Field mustard | cytosol | 72.08 | 76.1 |
| Bra017691.1-P | Field mustard | cytosol, extracellular, nucleus | 67.17 | 75.74 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 72.08 | 75.49 |
| CDX76311 | Canola | cytosol | 72.08 | 75.49 |
| CDX72513 | Canola | cytosol | 64.15 | 72.65 |
| Bra011582.1-P | Field mustard | cytosol, nucleus, plastid | 58.49 | 70.14 |
| CDY52651 | Canola | cytosol | 58.11 | 69.68 |
| CDX69109 | Canola | nucleus | 53.21 | 68.78 |
| VIT_03s0038g02450.t01 | Wine grape | nucleus | 36.98 | 45.37 |
| PGSC0003DMT400015829 | Potato | nucleus | 42.26 | 44.44 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 43.4 | 43.56 |
| Solyc10g055560.1.1 | Tomato | nucleus | 43.4 | 42.59 |
| Solyc01g111610.2.1 | Tomato | cytosol | 38.87 | 42.39 |
| KRH51394 | Soybean | nucleus | 36.6 | 33.8 |
| KRH24321 | Soybean | cytosol | 34.34 | 31.6 |
| KRH60696 | Soybean | nucleus, plastid | 34.72 | 31.51 |
| KRH29000 | Soybean | cytosol | 33.96 | 31.36 |
| KRG94235 | Soybean | cytosol | 27.92 | 29.84 |
| AT5G45100.1 | Thale cress | cytosol | 22.64 | 20.41 |
| AT5G47050.1 | Thale cress | nucleus | 22.64 | 20.0 |
| AT1G32740.1 | Thale cress | nucleus | 23.4 | 19.87 |
| AT4G19700.1 | Thale cress | cytosol | 22.26 | 19.41 |
| AT4G17680.1 | Thale cress | nucleus | 22.64 | 19.11 |
| AT1G79110.1 | Thale cress | nucleus | 25.28 | 18.72 |
| AT3G12920.1 | Thale cress | nucleus | 23.02 | 18.21 |
| AT1G45976.1 | Thale cress | cytosol | 22.26 | 18.15 |
| AT1G10650.1 | Thale cress | nucleus | 21.51 | 16.81 |
| AT1G60610.4 | Thale cress | nucleus | 19.62 | 15.29 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:829659 | UniProt:A0A178UTK0 | ProteinID:AEE86457.1 | EMBL:AK229374 |
| ArrayExpress:AT4G35070 | EnsemblPlantsGene:AT4G35070 | RefSeq:AT4G35070 | TAIR:AT4G35070 | RefSeq:AT4G35070-TAIR-G | EnsemblPlants:AT4G35070.1 |
| TAIR:AT4G35070.1 | EMBL:BT015338 | EMBL:BT015642 | ncoils:Coil | InterPro:E3ligase_BOI_like | InterPro:IPR013083 |
| RefSeq:NP_195233.2 | ProteinID:OAO96840.1 | PIRSF:PIRSF036836 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF6 | UniProt:Q66GR4 | UniParc:UPI0000196EE4 | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
Coordinates
chr4:+:16694044..16695711
Molecular Weight (calculated)
30251.3 Da
IEP (calculated)
5.686
GRAVY (calculated)
-0.576
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.