Factsheet for Bra034672.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76311	Canola	cytosol	99.2	98.42
CDX73168	Canola	cytosol	97.61	97.61
CDY15019	Canola	cytosol	97.61	97.61
CDY17506	Canola	cytosol, nucleus, plastid	96.81	96.05
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	75.7	80.85
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	66.14	75.11
AT4G35070.1	Thale cress	cytosol	76.1	72.08
VIT_03s0038g02450.t01	Wine grape	nucleus	36.65	42.59
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	41.04	39.02
PGSC0003DMT400015829	Potato	nucleus	39.04	38.89
Solyc01g111610.2.1	Tomato	cytosol	37.45	38.68
Solyc10g055560.1.1	Tomato	nucleus	41.04	38.15
KRH51394	Soybean	nucleus	37.45	32.75
KRH60696	Soybean	nucleus, plastid	35.46	30.48
KRH24321	Soybean	cytosol	32.67	28.47
KRH29000	Soybean	cytosol	32.27	28.22
KRG94235	Soybean	cytosol	26.69	27.02
Bra040255.1-P	Field mustard	nucleus	23.9	26.2
Bra024967.1-P	Field mustard	plastid	22.31	22.67
Bra017511.1-P	Field mustard	nucleus	24.7	20.53
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	23.9	20.27
Bra039354.1-P	Field mustard	cytosol	25.5	19.69
Bra035092.1-P	Field mustard	nucleus	24.7	19.62
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	21.51	19.35
Bra014051.1-P	Field mustard	nucleus	23.9	19.29
Bra034718.1-P	Field mustard	nucleus	25.9	19.29
Bra012532.1-P	Field mustard	nucleus	23.51	19.28
Bra013423.1-P	Field mustard	nucleus	22.71	19.26
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	21.51	19.15
Bra001477.1-P	Field mustard	nucleus	24.3	17.94
Bra012650.1-P	Field mustard	nucleus	22.71	16.33
Bra022093.1-P	Field mustard	nucleus	13.94	15.91
Bra031495.1-P	Field mustard	nucleus	20.32	15.6
Bra018428.1-P	Field mustard	nucleus	20.32	15.09
Bra019910.1-P	Field mustard	nucleus, plastid	17.13	14.14

Protein Annotations

EnsemblPlants:Bra034672.1	EnsemblPlants:Bra034672.1-P	EnsemblPlantsGene:Bra034672	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PIRSF:PIRSF036836	SEG:seg
UniParc:UPI00025461B9	UniProt:M4F0S7	MapMan:35.1	:	:	:

Description

AT4G35070 (E=1e-086) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding (TAIR:AT1G45976.1); Has 762 Blast hits to 716 proteins in 103 species: Archae - 2; Bacteria - 18; Metazoa - 250; Fungi - 8; Plants - 213; Viruses - 21; Other Eukaryotes - 250 (source: NCBI BLink).

Coordinates

chrA08:-:12157060..12157894

Molecular Weight (calculated)

28591.2 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.580

Length

251 amino acids

Sequence
(BLAST)

001: MAIQAQLHYN ASNVNQIGTG GSLLNNNGGI GIDQSYMNNH NLLSQKDLNQ HALFQHQQYR SQSVLDAYME RQKQEIDQFI RVQNERLRYA LQEQRRQEME
101: TMLRKMEAKA LVLMTQKEEE MSRALSKNME LEDLLRKMEM ENQTWQRMAR ENEAMVATLN STLEQARERA AAATCHNEAM AVEDEGSCCG GDDFAAKKVS
201: SCCWNCGSNG ETRVLFLPCR HLCCCTGCED GLVLCPMCSA PKKNRIEAFI F

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.