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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000304.1-P
Bra001524.1-P
Bra005514.1-P
Bra010231.1-P
Bra010501.1-P
Bra011282.1-P
Bra011662.1-P
Bra013779.1-P
Bra014037.1-P
Bra017747.1-P
Bra019239.1-P
Bra021836.1-P
Bra022931.1-P
Bra023998.1-P
Bra028196.1-P
Bra028662.1-P
Bra032084.1-P
Bra036240.1-P
Bra036335.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G19700.1 Bra014037.1-P AT1G45145.1 21798944
AT4G19700.1 Bra036335.1-P AT1G45145.1 21798944
AT4G19700.1 Bra032084.1-P AT2G24570.1 21798944
AT4G19700.1 Bra005514.1-P AT2G33210.1 21798944
AT4G19700.1 Bra021836.1-P AT2G33210.1 21798944
AT4G19700.1 Bra022931.1-P AT2G33210.1 21798944
AT4G19700.1 Bra000304.1-P AT2G43370.1 21798944
AT4G19700.1 Bra001524.1-P AT3G13860.1 21798944
AT4G19700.1 Bra036240.1-P AT4G02770.1 21798944
AT4G19700.1 Bra013779.1-P AT4G24240.1 21798944
AT4G19700.1 Bra019239.1-P AT4G24240.1 21798944
AT4G19700.1 Bra010231.1-P AT4G31550.1 21798944
AT4G19700.1 Bra011282.1-P AT4G31550.1 21798944
AT4G19700.1 Bra023998.1-P AT4G31550.1 21798944
AT4G19700.1 Bra010501.1-P AT4G36110.1 21798944
AT4G19700.1 Bra011662.1-P AT4G36110.1 21798944
AT4G19700.1 Bra017747.1-P AT4G36110.1 21798944
AT4G19700.1 Bra028662.1-P AT5G08330.1 21798944
AT4G19700.1 Bra028196.1-P AT5G38640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51918 Canola cytosol 93.58 96.52
Bra012532.1-P Field mustard nucleus 80.41 77.78
AT4G19700.1 Thale cress cytosol 73.99 72.04
Bra039533.1-P Field mustard cytosol, nucleus, plastid 57.43 57.43
Bra027588.1-P Field mustard cytosol, nucleus, plastid 52.7 55.91
Bra028364.1-P Field mustard cytosol, nucleus, plastid 51.35 53.9
VIT_10s0042g01070.t01 Wine grape nucleus 45.95 44.88
KRH36722 Soybean nucleus 45.61 43.55
KRH11729 Soybean nucleus 45.61 43.13
KRG89416 Soybean nucleus 44.93 42.36
KRH50476 Soybean cytosol, nucleus, plastid 44.93 41.56
PGSC0003DMT400062617 Potato nucleus 41.22 40.67
PGSC0003DMT400026783 Potato cytosol, mitochondrion, nucleus, plastid, vacuole 44.26 40.56
Solyc02g031710.2.1 Tomato nucleus 40.88 39.03
GSMUA_Achr5P02100_001 Banana plastid 31.42 38.11
Bra035092.1-P Field mustard nucleus 40.2 37.66
GSMUA_Achr2P13160_001 Banana plastid 31.42 37.65
GSMUA_Achr7P00850_001 Banana plastid 29.05 37.39
GSMUA_Achr4P32070_001 Banana nucleus 35.81 37.06
GSMUA_Achr4P23050_001 Banana nucleus 21.62 34.04
Solyc02g069180.2.1 Tomato plastid 32.43 33.92
Bra034718.1-P Field mustard nucleus 38.51 33.83
GSMUA_Achr4P28300_001 Banana nucleus 27.36 33.61
GSMUA_Achr6P31690_001 Banana nucleus 33.78 33.56
Bra039354.1-P Field mustard cytosol 36.49 33.23
Bra001477.1-P Field mustard nucleus 37.84 32.94
GSMUA_Achr9P09830_001 Banana nucleus 34.12 31.46
TraesCS3B01G484600.1 Wheat cytosol 28.72 30.91
TraesCS3A01G448500.1 Wheat mitochondrion 29.39 29.69
TraesCS3D01G441300.1 Wheat mitochondrion 29.05 29.66
TraesCS3D01G441000.1 Wheat mitochondrion 29.05 29.66
TraesCS6A01G079900.1 Wheat cytosol, mitochondrion, plastid 23.31 28.87
TraesCS7D01G431300.1 Wheat mitochondrion 30.41 28.75
HORVU4Hr1G003180.3 Barley mitochondrion 29.39 28.34
TraesCS7B01G340700.1 Wheat mitochondrion 29.73 28.21
TraesCS4D01G018100.1 Wheat mitochondrion, nucleus 28.72 28.05
TraesCS4B01G019600.1 Wheat mitochondrion 29.05 27.74
TraesCS7A01G442100.1 Wheat mitochondrion 29.39 27.71
TraesCS7A01G441900.1 Wheat mitochondrion 29.39 27.53
TraesCS7A01G442300.1 Wheat mitochondrion 29.39 27.44
TraesCS6D01G073600.1 Wheat cytosol, nucleus, plastid 25.0 27.31
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 30.07 26.97
TraesCS4A01G293700.1 Wheat mitochondrion 28.04 26.95
TraesCS7B01G340600.1 Wheat mitochondrion 28.38 26.92
HORVU7Hr1G100520.1 Barley cytosol, mitochondrion 27.7 26.71
HORVU7Hr1G100540.2 Barley mitochondrion 27.36 26.64
TraesCS7D01G431200.1 Wheat mitochondrion 27.7 26.62
EER91098 Sorghum nucleus 31.76 26.48
HORVU6Hr1G021960.1 Barley plastid 22.97 26.05
HORVU6Hr1G021880.1 Barley plastid 22.97 26.05
TraesCS7B01G340500.1 Wheat mitochondrion 27.7 26.03
TraesCS7D01G431100.1 Wheat mitochondrion, nucleus 27.36 25.8
Bra024967.1-P Field mustard plastid 20.95 25.1
TraesCS6D01G110700.1 Wheat nucleus 22.3 25.1
TraesCS6B01G149100.1 Wheat nucleus 21.96 24.71
Bra011582.1-P Field mustard cytosol, nucleus, plastid 18.24 24.43
TraesCS6A01G120700.1 Wheat nucleus 21.28 23.95
Bra017511.1-P Field mustard nucleus 24.32 23.84
Bra017691.1-P Field mustard cytosol, extracellular, nucleus 18.58 23.4
Bra040255.1-P Field mustard nucleus 17.91 23.14
Bra034672.1-P Field mustard cytosol 19.26 22.71
Bra019910.1-P Field mustard nucleus, plastid 21.28 20.72
Zm00001d033419_P001 Maize plastid 19.59 20.71
Bra031495.1-P Field mustard nucleus 22.64 20.49
Bra018428.1-P Field mustard nucleus 22.97 20.12
Bra014051.1-P Field mustard nucleus 19.93 18.97
Bra012650.1-P Field mustard nucleus 19.93 16.91
Bra022093.1-P Field mustard nucleus 11.15 15.0
Protein Annotations
EnsemblPlants:Bra013423.1EnsemblPlants:Bra013423.1-PEnsemblPlantsGene:Bra013423Gene3D:3.30.40.10InterPro:E3ligase_BOI_likeInterPro:IPR001841
InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF12
PFAM:PF13920PFscan:PS50089PIRSF:PIRSF036836SEG:segSUPFAM:SSF57850UniParc:UPI000254681B
UniProt:M4DAB3MapMan:35.1::::
Description
AT4G19700 (E=1e-103) RING | RING; protein binding / zinc ion binding
Coordinates
chrA01:-:5559178..5560205
Molecular Weight (calculated)
32629.0 Da
IEP (calculated)
7.377
GRAVY (calculated)
-0.267
Length
296 amino acids
Sequence
(BLAST)
001: MPVQARHMNI FSPQLLSNRV NFKQDMNHGE FITGETLTVD PLSNAAAKPS FNKSESGLTY NFNSFNVVPP PRKRPRVSQY LDSDAHFASA VKLGSGPFGS
101: PSSLINAELV SHIQKQQQLE IDRFVAQQTE KLRIEIEARQ QTQTQMLASA VQNALAMKLK EKDDEILRMR NLNCVLHERV KSIFVENQIW RDIAQTNEAQ
201: ANNLRTNLDQ VLAQIKTLPT AVENDVESSC GSCVEGGEAI TAVSGGCKRC GEREASVLVL PCRHLCLCTV CGSALLRTCP VCDSVMNASV HVNMSS
Best Arabidopsis Sequence Match ( AT4G19700.1 )
(BLAST)
001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS
Arabidopsis Description
BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.