Factsheet for Bra018428.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20963	Canola	nucleus	99.7	99.7
CDY20611	Canola	nucleus	97.93	97.07
AT1G10650.1	Thale cress	nucleus	83.43	83.19
Bra019910.1-P	Field mustard	nucleus, plastid	73.37	81.58
Bra031495.1-P	Field mustard	nucleus	64.79	66.97
KRH69583	Soybean	nucleus	53.25	53.41
KRH74575	Soybean	cytosol	52.66	52.82
PGSC0003DMT400035059	Potato	nucleus	51.18	52.11
VIT_01s0127g00360.t01	Wine grape	nucleus	53.85	51.56
Solyc05g005210.2.1	Tomato	nucleus	49.7	50.3
Bra040255.1-P	Field mustard	nucleus	26.33	38.86
TraesCSU01G113400.1	Wheat	nucleus	35.8	34.47
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	34.91	33.62
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	34.32	33.24
Os02t0130300-02	Rice	cytosol, nucleus, plastid	33.73	33.24
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	35.8	33.15
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	35.21	32.25
Bra024967.1-P	Field mustard	plastid	23.37	31.98
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	33.43	31.74
Bra017511.1-P	Field mustard	nucleus	26.33	29.47
Bra014051.1-P	Field mustard	nucleus	25.15	27.33
Bra012532.1-P	Field mustard	nucleus	21.3	23.53
Bra013423.1-P	Field mustard	nucleus	20.12	22.97
Bra022093.1-P	Field mustard	nucleus	14.79	22.73
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	19.53	22.3
Bra035092.1-P	Field mustard	nucleus	20.71	22.15
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	17.75	21.51
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	13.91	21.27
Bra039354.1-P	Field mustard	cytosol	20.12	20.92
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	17.46	20.92
Bra001477.1-P	Field mustard	nucleus	21.01	20.88
Bra034718.1-P	Field mustard	nucleus	20.41	20.47
Bra034672.1-P	Field mustard	cytosol	15.09	20.32
Bra012650.1-P	Field mustard	nucleus	20.71	20.06
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	13.91	20.0

Protein Annotations

EnsemblPlants:Bra018428.1	EnsemblPlants:Bra018428.1-P	EnsemblPlantsGene:Bra018428	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF8
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	UniParc:UPI0002547E75	UniProt:M4DPI7	MapMan:35.1

Description

AT1G10650 (E=8e-157) | protein binding / zinc ion binding

Coordinates

chrA05:+:8171171..8172353

Molecular Weight (calculated)

38072.9 Da

IEP (calculated)

7.522

GRAVY (calculated)

-0.681

Length

338 amino acids

Sequence
(BLAST)

001: MSRGNNGYTV PPVFMNENHL QYQTNAQTNQ LHFLGTMGGR CTVDPVNYFA NDNHAPMLRP NKRGREAESI SHNVQRQQKL QMSLNYNHNN ISVQEEAPKE
101: NLVSTGLRLS YDDDERNSSV TSASGSIVAA APPILQSLDD TLRIDLHRQK DELEQFLKIQ AAQMAKEVRD MKQRQIASFL NTIEKGVSKK LQEKDQEIDI
201: MNKTNKELVE RIKQVATEAQ NWHYRAKYNE SVVNALKTSL QQAMSHNNNN VVAGADHCKE GFGDSEIDDA ASSYIDPNNS NNNMGSQRMR CKMCHGKEVS
301: VLVVPCRHLS LCKECDVFTG FCPVCKSLKT SSVQVFFS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.