Factsheet for Bra034718.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23552	Canola	cytosol	61.72	95.85
Bra039354.1-P	Field mustard	cytosol	80.42	83.38
AT3G12920.1	Thale cress	nucleus	76.56	77.01
Bra001477.1-P	Field mustard	nucleus	76.85	76.18
KRH43767	Soybean	nucleus	34.12	45.45
Bra035092.1-P	Field mustard	nucleus	42.43	45.25
VIT_19s0027g00740.t01	Wine grape	nucleus	41.25	44.98
GSMUA_Achr7P00850_001	Banana	plastid	30.56	44.78
GSMUA_Achr2P13160_001	Banana	plastid	30.86	42.11
KRH13682	Soybean	nucleus	41.84	41.84
GSMUA_Achr4P32070_001	Banana	nucleus	35.01	41.26
GSMUA_Achr5P02100_001	Banana	plastid	29.08	40.16
GSMUA_Achr4P23050_001	Banana	nucleus	21.96	39.36
Bra013423.1-P	Field mustard	nucleus	33.83	38.51
GSMUA_Achr6P31690_001	Banana	nucleus	33.83	38.26
GSMUA_Achr4P28300_001	Banana	nucleus	27.3	38.17
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	33.23	37.84
Bra012532.1-P	Field mustard	nucleus	34.12	37.58
GSMUA_Achr9P09830_001	Banana	nucleus	33.53	35.2
TraesCS3D01G441300.1	Wheat	mitochondrion	28.49	33.1
TraesCS7D01G431300.1	Wheat	mitochondrion	30.56	32.91
TraesCS3D01G441000.1	Wheat	mitochondrion	28.19	32.76
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	29.38	32.67
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	26.71	32.26
TraesCS3A01G448500.1	Wheat	mitochondrion	27.89	32.08
TraesCS3B01G484600.1	Wheat	cytosol	26.11	32.0
HORVU4Hr1G003180.3	Barley	mitochondrion	29.08	31.92
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	26.71	31.91
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	28.49	31.27
TraesCS4B01G019600.1	Wheat	mitochondrion	28.49	30.97
TraesCS4A01G293700.1	Wheat	mitochondrion	28.19	30.84
TraesCS7A01G442300.1	Wheat	mitochondrion	28.78	30.6
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	21.66	30.54
TraesCS7A01G442100.1	Wheat	mitochondrion	28.19	30.25
TraesCS7B01G340700.1	Wheat	mitochondrion	27.89	30.13
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	29.38	30.0
HORVU7Hr1G100540.2	Barley	mitochondrion	27.0	29.93
TraesCS7B01G340600.1	Wheat	mitochondrion	27.6	29.81
TraesCS7B01G340500.1	Wheat	mitochondrion	27.6	29.52
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	27.0	28.98
EER91098	Sorghum	nucleus	30.27	28.73
TraesCS7D01G431200.1	Wheat	mitochondrion	26.11	28.57
TraesCS7A01G441900.1	Wheat	mitochondrion	26.71	28.48
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	22.26	27.68
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	17.8	27.15
HORVU6Hr1G021960.1	Barley	plastid	20.77	26.82
HORVU6Hr1G021880.1	Barley	plastid	20.77	26.82
TraesCS6A01G120700.1	Wheat	nucleus	20.77	26.62
Zm00001d033419_P001	Maize	plastid	21.96	26.43
Bra034672.1-P	Field mustard	cytosol	19.29	25.9
TraesCS6B01G149100.1	Wheat	nucleus	20.18	25.86
Bra040255.1-P	Field mustard	nucleus	17.51	25.76
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	17.8	25.53
TraesCS6D01G110700.1	Wheat	nucleus	19.88	25.48
Bra017511.1-P	Field mustard	nucleus	21.07	23.51
Bra019910.1-P	Field mustard	nucleus, plastid	20.47	22.7
Bra024967.1-P	Field mustard	plastid	16.32	22.27
Bra014051.1-P	Field mustard	nucleus	20.18	21.86
Bra031495.1-P	Field mustard	nucleus	19.88	20.49
Bra018428.1-P	Field mustard	nucleus	20.47	20.41
Bra012650.1-P	Field mustard	nucleus	18.4	17.77
Bra022093.1-P	Field mustard	nucleus	11.28	17.27

Protein Annotations

EnsemblPlants:Bra034718.1	EnsemblPlants:Bra034718.1-P	EnsemblPlantsGene:Bra034718	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	UniParc:UPI000254817D	UniProt:M4F0X3	MapMan:35.1	:

Description

AT3G12920 (E=2e-138) | protein binding / zinc ion binding

Coordinates

chrA05:+:21123444..21124626

Molecular Weight (calculated)

37691.9 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.477

Length

337 amino acids

Sequence
(BLAST)

001: MAVEAHHLNH LYSSNNRERM NPVEANGLVY NTQMRYNTVQ ATTMPFNPAM ECQTSLLNPV YNLSPFDCLA QQSMKPMIHS VESSLTFNSE TNGNVGYLCP
101: VSSSSMRKRP IEESAVVNHM PSQKRCTDPL MFLGQDLSSN VQHHNFDIDR LISHHVEIMR MDIEEKRKAQ GRKIMEAIEQ GLAKTLRAKD EEINHIGKLN
201: LFLEEKVRSL CVENQIWRDM AQSNEATVNS LRSNLQQVLA AVERNKWEEP TAADDAQSCC GSNDEGDSDE RWRLAGEAKS VRTITSTMCR GCGKGEASVL
301: LLPCRHMCLC TVCGSSVNTC PVCKSPKNAS LHVNLSS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.