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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G038680.8
HORVU1Hr1G075560.1
HORVU1Hr1G079910.1
HORVU3Hr1G039500.1
HORVU3Hr1G097420.1
HORVU4Hr1G012580.5
HORVU4Hr1G071510.2
HORVU4Hr1G078820.3
HORVU5Hr1G015120.1
HORVU5Hr1G052630.2
HORVU5Hr1G078170.27
HORVU5Hr1G092770.2
HORVU5Hr1G092900.2
HORVU5Hr1G109710.2
HORVU5Hr1G122800.4
HORVU6Hr1G093960.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G19700.1 HORVU1Hr1G075560.1 AT1G45145.1 21798944
AT4G19700.1 HORVU3Hr1G039500.1 AT2G24570.1 21798944
AT4G19700.1 HORVU3Hr1G097420.1 AT2G24570.1 21798944
AT4G19700.1 HORVU4Hr1G012580.5 AT2G24570.1 21798944
AT4G19700.1 HORVU5Hr1G015120.1 AT2G24570.1 21798944
AT4G19700.1 HORVU5Hr1G052630.2 AT2G24570.1 21798944
AT4G19700.1 HORVU5Hr1G092770.2 AT2G24570.1 21798944
AT4G19700.1 HORVU5Hr1G122800.4 AT2G24570.1 21798944
AT4G19700.1 HORVU1Hr1G038680.8 AT2G33210.1 21798944
AT4G19700.1 HORVU4Hr1G071510.2 AT2G33210.1 21798944
AT4G19700.1 HORVU4Hr1G078820.3 AT2G33210.1 21798944
AT4G19700.1 HORVU5Hr1G078170.27 AT2G43370.1 21798944
AT4G19700.1 HORVU1Hr1G079910.1 AT3G13860.1 21798944
AT4G19700.1 HORVU5Hr1G109710.2 AT4G02770.1 21798944
AT4G19700.1 HORVU3Hr1G039500.1 AT4G31550.1 21798944
AT4G19700.1 HORVU3Hr1G097420.1 AT4G31550.1 21798944
AT4G19700.1 HORVU4Hr1G012580.5 AT4G31550.1 21798944
AT4G19700.1 HORVU5Hr1G015120.1 AT4G31550.1 21798944
AT4G19700.1 HORVU5Hr1G052630.2 AT4G31550.1 21798944
AT4G19700.1 HORVU5Hr1G092770.2 AT4G31550.1 21798944
AT4G19700.1 HORVU5Hr1G122800.4 AT4G31550.1 21798944
AT4G19700.1 HORVU6Hr1G093960.1 AT5G08330.1 21798944
AT4G19700.1 HORVU5Hr1G092900.2 AT5G38640.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G021880.1 Barley plastid 100.0 100.0
TraesCS6B01G149100.1 Wheat nucleus 75.48 74.9
TraesCS6A01G120700.1 Wheat nucleus 75.48 74.9
TraesCS6D01G110700.1 Wheat nucleus 74.33 73.76
HORVU4Hr1G003180.3 Barley mitochondrion 54.79 46.58
HORVU7Hr1G100520.1 Barley cytosol, mitochondrion 52.49 44.63
HORVU7Hr1G100540.2 Barley mitochondrion 51.34 44.08
GSMUA_Achr7P00850_001 Banana plastid 30.65 34.78
GSMUA_Achr4P28300_001 Banana nucleus 30.27 32.78
GSMUA_Achr4P23050_001 Banana nucleus 23.37 32.45
GSMUA_Achr2P13160_001 Banana plastid 30.27 31.98
EER91098 Sorghum nucleus 42.91 31.55
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 39.46 31.21
CDX94520 Canola cytosol 26.44 29.49
CDY07541 Canola cytosol 26.44 29.49
CDY09318 Canola cytosol 26.44 29.49
CDY21311 Canola cytosol 26.44 29.49
GSMUA_Achr5P02100_001 Banana plastid 26.82 28.69
GSMUA_Achr4P32070_001 Banana nucleus 31.03 28.32
GSMUA_Achr6P31690_001 Banana nucleus 31.8 27.85
KRH43767 Soybean nucleus 26.82 27.67
AT5G45100.1 Thale cress cytosol 29.5 26.19
VIT_10s0042g01070.t01 Wine grape nucleus 30.27 26.07
AT4G19700.1 Thale cress cytosol 30.27 25.99
CDX88507 Canola nucleus 29.5 25.84
Zm00001d033419_P001 Maize plastid 27.59 25.71
CDY26402 Canola cytosol 28.74 25.34
Bra039533.1-P Field mustard cytosol, nucleus, plastid 28.74 25.34
GSMUA_Achr9P09830_001 Banana nucleus 30.65 24.92
KRH36722 Soybean nucleus 29.5 24.84
CDY71192 Canola cytosol 26.44 24.64
KRH11729 Soybean nucleus 29.5 24.6
CDY01615 Canola cytosol 28.74 24.59
CDY71607 Canola cytosol 28.35 24.18
Bra012532.1-P Field mustard nucleus 28.35 24.18
Bra035092.1-P Field mustard nucleus 29.12 24.05
CDX87407 Canola nucleus 29.12 24.05
CDX79294 Canola nucleus 27.97 24.01
CDY51918 Canola cytosol 26.05 23.69
CDY13070 Canola cytosol 25.29 23.66
Bra027588.1-P Field mustard cytosol, nucleus, plastid 25.29 23.66
CDY18062 Canola cytosol 25.29 23.4
Bra028364.1-P Field mustard cytosol, nucleus, plastid 25.29 23.4
PGSC0003DMT400062617 Potato nucleus 26.82 23.33
VIT_19s0027g00740.t01 Wine grape nucleus 27.59 23.3
PGSC0003DMT400026783 Potato cytosol, mitochondrion, nucleus, plastid, vacuole 28.74 23.22
KRH50476 Soybean cytosol, nucleus, plastid 28.35 23.12
CDY46345 Canola cytosol 24.9 23.05
Bra013423.1-P Field mustard nucleus 26.05 22.97
KRG89416 Soybean nucleus 27.2 22.61
AT3G12920.1 Thale cress nucleus 28.74 22.39
Solyc02g031710.2.1 Tomato nucleus 26.44 22.26
KRH13682 Soybean nucleus 28.74 22.26
CDY24237 Canola nucleus 26.82 21.6
Bra001477.1-P Field mustard nucleus 27.97 21.47
CDY43390 Canola cytosol 26.44 21.23
Bra039354.1-P Field mustard cytosol 26.44 21.23
AT1G79110.1 Thale cress nucleus 29.12 21.23
CDX82568 Canola nucleus 27.59 21.18
CDY64561 Canola nucleus 27.2 20.88
Solyc02g069180.2.1 Tomato plastid 22.61 20.85
Bra034718.1-P Field mustard nucleus 26.82 20.77
HORVU1Hr1G054930.3 Barley cytosol 23.75 18.9
HORVU6Hr1G066640.4 Barley nucleus 21.84 16.62
CDY23552 Canola cytosol 12.26 14.75
HORVU6Hr1G015410.5 Barley cytosol, mitochondrion, nucleus 18.39 13.01
HORVU4Hr1G061210.1 Barley cytosol 18.39 11.62
Protein Annotations
EnsemblPlants:HORVU6Hr1G021960.1EnsemblPlantsGene:HORVU6Hr1G021960InterPro:E3ligase_BOI_likeInterPro:IPR001841InterPro:Znf_RINGPANTHER:PTHR42647
PANTHER:PTHR42647:SF12PIRSF:PIRSF036836SEG:segSMART:SM00184UniParc:UPI0002966905UniProt:M0W8A6
MapMan:35.1:::::
Description
No Description!
Coordinates
chrchr6H:-:68355948..68356835
Molecular Weight (calculated)
28465.6 Da
IEP (calculated)
6.489
GRAVY (calculated)
-0.427
Length
261 amino acids
Sequence
(BLAST)
001: MPMSNEPLYG SAVPSQQGYH SYNGLVASPS PTLGVRFDGA QEMTTNKRKR DEQSSTLGAA QAQQHPVVVD RNVRNQAEKF WNTLEQERQM QETLTVSTVK
101: AMAEKLLLAK DQEIMRSWSV NWALGERFRT LYREAQAWRM DAQSKQTAAN VLRADLERAL AQQAARYGGG GSGSGNGEDD AESCCWGENH VAFCGEVEVE
201: TPVVGPPVTG VGMCKRCNQS APVVVMLPCR HLSVCGPCAE AAWWCPSCGC AKQGSICINF S
Best Arabidopsis Sequence Match ( AT5G45100.2 )
(BLAST)
001: MNNGQQIAGG GFPVTIGDRN LQYIDPINSF NKSESELTAI SKRQRDSTFD SDALIASQKR RAIAFSPASL IDAELVSQIQ QQNSEIDRFV AQQTETLRIE
101: LEARQRTQTR MLASAVQNAI LKKLKAKDEE IIRMGKLNWV LQERVKNLYV ENQIWRDLAQ TNEATANNLR SNLEQVLAQV DDLDAFRRPL VEEADDAESS
201: CGSCDGGDVT AVVNGGCKRC GELTASVLVL PCRHLCLCTV CGSSALLRTC PVCDMVMTAS VHVNMSS
Arabidopsis Description
BRG1BOI-related E3 ubiquitin-protein ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.