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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
TargetP:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G021800.1
HORVU0Hr1G027080.4
HORVU1Hr1G053510.1
HORVU1Hr1G092980.14
HORVU3Hr1G055550.3
HORVU4Hr1G012650.14
HORVU4Hr1G087700.2
HORVU6Hr1G003300.1
HORVU6Hr1G062870.1
HORVU6Hr1G063650.1
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38640.1 HORVU0Hr1G021800.1 AT1G01440.1 21798944
AT5G38640.1 HORVU1Hr1G092980.14 AT1G01440.1 21798944
AT5G38640.1 HORVU3Hr1G055550.3 AT1G01440.1 21798944
AT5G38640.1 HORVU7Hr1G082720.10 AT1G01440.1 21798944
AT5G38640.1 HORVU6Hr1G003300.1 AT1G37130.1 21798944
AT5G38640.1 HORVU4Hr1G012650.14 AT1G60080.1 21798944
AT5G38640.1 HORVU6Hr1G075650.1 AT3G47620.1 21798944
AT5G38640.1 HORVU7Hr1G038130.1 AT3G47620.1 21798944
AT5G38640.1 HORVU0Hr1G027080.4 AT3G48150.1 21798944
AT5G38640.1 HORVU6Hr1G062870.1 AT3G48150.1 21798944
AT5G38640.1 HORVU1Hr1G053510.1 AT4G00150.1 21798944
AT5G38640.1 HORVU4Hr1G087700.2 AT4G00150.1 21798944
AT5G38640.1 HORVU6Hr1G063650.1 AT4G00150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G384000.3 Wheat mitochondrion 93.72 97.39
TraesCS5A01G374400.3 Wheat mitochondrion 93.09 96.74
TraesCS5B01G376300.1 Wheat mitochondrion 92.94 96.57
Os03t0645200-01 Rice cytosol, plastid 21.82 92.67
Zm00001d033223_P003 Maize cytosol 30.77 84.12
Zm00001d013692_P001 Maize cytosol 77.86 81.44
AT2G44070.1 Thale cress cytosol 39.09 74.77
VIT_14s0083g00170.t01 Wine grape cytosol 56.99 73.78
EER91168 Sorghum plastid 81.16 71.61
GSMUA_Achr4P22890_001 Banana cytosol 67.82 65.75
GSMUA_Achr7P01240_001 Banana cytosol 65.78 64.86
CDY49077 Canola cytosol, plastid 50.55 62.77
CDY01647 Canola cytosol 60.91 61.69
CDX74513 Canola nucleus 60.91 61.59
Bra028196.1-P Field mustard nucleus 60.75 61.43
PGSC0003DMT400026040 Potato cytosol 60.44 60.44
KRH03820 Soybean cytosol, mitochondrion, nucleus, plasma membrane 52.28 60.22
Solyc02g089810.2.1 Tomato nucleus 60.13 60.13
AT5G38640.1 Thale cress cytosol 60.6 60.12
VIT_17s0000g04230.t01 Wine grape plastid 61.07 59.94
KRH01494 Soybean nucleus 59.65 59.75
KRH18264 Soybean cytosol 60.75 58.73
KRG93828 Soybean endoplasmic reticulum, nucleus 60.75 58.64
PGSC0003DMT400059378 Potato cytosol, plastid 56.51 58.06
CDY27424 Canola cytosol 10.99 57.38
Solyc12g038340.1.1 Tomato nucleus 55.73 57.26
CDX77270 Canola mitochondrion 53.22 51.6
CDY16477 Canola mitochondrion 53.22 51.6
KRH54799 Soybean plastid 55.1 51.47
Bra014165.1-P Field mustard mitochondrion 53.06 51.45
AT1G48970.1 Thale cress mitochondrion 51.49 49.25
HORVU5Hr1G038720.1 Barley cytosol 13.81 24.31
HORVU1Hr1G035490.4 Barley plastid 12.87 19.71
Protein Annotations
EnsemblPlants:HORVU5Hr1G092900.2EnsemblPlantsGene:HORVU5Hr1G092900Gene3D:3.40.50.10470GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0044237InterPro:IF-2B-relatedInterPro:NagB/RpiA_transferase-likeKEGG:00270+5.3.1.23ncoils:CoilPANTHER:PTHR10233
PANTHER:PTHR10233:SF29PFAM:PF01008SEG:segSUPFAM:SSF100950UniParc:UPI000B47B310UniProt:A0A287S9I3
MapMan:17.4.1.2.3.4:::::
Description
No Description!
Coordinates
chrchr5H:+:589775250..589782455
Molecular Weight (calculated)
69353.9 Da
IEP (calculated)
9.040
GRAVY (calculated)
-0.312
Length
637 amino acids
Sequence
(BLAST)
001: TLPRLVRRVQ TPNPHAKSPT PATAMDLRRP PRSTSGGVEP KIRQVGFVTP DVSGPSEPLA VAAAAVSLTG AAVGSPPASD LSPGSLSPVM IPPPRHVDHL
101: SPDSPSPPAS DVLLLASSAP QPSSMRFHAA SEFGEEDSRS LAPSAGELET NKGDLTEIRN EDAPESIPQK QKPSKAERRA IQEAQRAAKA AAKEAGLSGK
201: STGAAFGANP ATSKQAKPAK ISQKKDVPHA PSTVASEKKV TERQPERDRK KDVPHPRMQF DDVHRVEKAK KRAIVNQSEA RNRVELFRHL PQYVHGTQLP
301: DLESKFFQLE PIHPSVYKVG LQYLSGEVSG GNGRCIAMLL AFREAIKDYS TPPNKTLSRD LTAKVSSYVS FFIECRPLSI SMGNAIKFLK NRIAKLPITL
401: SESEAKASLQ SDIDRFINEK IVVADQVIVS HAITKVRDDD VLLTYGSSSV VEMILEHAHE LGRKFRVIVV DSRPKLEGQG LLCRLVAKGI NCTYTHINAV
501: SYIMHEVTKV FLGASSIFSN GTVYSRVGTA SVAMVAHAYG IPVLVCCEAY KFHERVQLDS ICANELGDPD VISRIPGRAD LGDLKNWADN ENLQLLNLTY
601: DATPSDYVSM IITDYGMLPP TSVPVIVREY RKEQLWV
Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.