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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90032
CDY15177
CDY24170
CDY33620
CDY36901
CDY36943
CDY44976
CDY56983
CDY58069
CDY58070
CDY63061
CDY63062
CDY63123
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G38640.1 CDX90032 AT1G01440.1 21798944
AT5G38640.1 CDY15177 AT1G01440.1 21798944
AT5G38640.1 CDY33620 AT1G60080.1 21798944
AT5G38640.1 CDY56983 AT1G60080.1 21798944
AT5G38640.1 CDY63123 AT1G60080.1 21798944
AT5G38640.1 CDY24170 AT3G47620.1 21798944
AT5G38640.1 CDY36943 AT3G47620.1 21798944
AT5G38640.1 CDY36901 AT3G48150.1 21798944
AT5G38640.1 CDY44976 AT3G48150.1 21798944
AT5G38640.1 CDY58069 AT3G48150.1 21798944
AT5G38640.1 CDY58070 AT3G48150.1 21798944
AT5G38640.1 CDY70805 AT3G48150.1 21798944
AT5G38640.1 CDY63061 AT4G00150.1 21798944
AT5G38640.1 CDY63062 AT4G00150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028196.1-P Field mustard nucleus 99.68 99.68
CDY01647 Canola cytosol 98.1 98.25
AT5G38640.1 Thale cress cytosol 91.9 90.19
CDY49077 Canola cytosol, plastid 72.86 89.47
AT2G44070.1 Thale cress cytosol 46.83 88.59
Os03t0645200-01 Rice cytosol, plastid 18.73 78.67
VIT_14s0083g00170.t01 Wine grape cytosol 60.32 77.24
Zm00001d033223_P003 Maize cytosol 27.14 73.39
KRH01494 Soybean nucleus 69.37 68.71
PGSC0003DMT400026040 Potato cytosol 68.25 67.5
Solyc02g089810.2.1 Tomato nucleus 67.46 66.72
KRG93828 Soybean endoplasmic reticulum, nucleus 69.21 66.06
KRH18264 Soybean cytosol 68.89 65.86
TraesCS5B01G376300.1 Wheat mitochondrion 62.38 64.11
TraesCS5D01G384000.3 Wheat mitochondrion 62.22 63.95
GSMUA_Achr4P22890_001 Banana cytosol 66.67 63.93
TraesCS5A01G374400.3 Wheat mitochondrion 61.75 63.46
CDY27424 Canola cytosol 12.22 63.11
GSMUA_Achr7P01240_001 Banana cytosol 64.13 62.54
KXG24018 Sorghum mitochondrion, plastid 59.21 62.48
Zm00001d013692_P001 Maize cytosol 59.68 61.74
HORVU5Hr1G092900.2 Barley mitochondrion 61.59 60.91
Zm00001d031081_P001 Maize endoplasmic reticulum, vacuole 52.7 60.81
Os12t0617100-01 Rice mitochondrion 58.1 60.3
CDX77270 Canola mitochondrion 57.3 54.95
CDY16477 Canola mitochondrion 57.3 54.95
EER91168 Sorghum plastid 59.84 52.22
CDY03642 Canola mitochondrion 14.44 24.59
CDY36614 Canola cytosol 14.92 24.35
CDX82154 Canola mitochondrion 14.44 24.33
CDX72907 Canola cytosol 14.76 24.16
CDX96399 Canola cytosol 14.76 24.09
CDY24066 Canola cytosol 14.29 23.38
CDY28065 Canola cytosol 13.02 20.0
CDY08006 Canola extracellular 2.54 18.82
CDY34906 Canola mitochondrion 11.9 16.23
CDY24631 Canola cytosol 12.86 10.77
Protein Annotations
EnsemblPlants:CDX74513EnsemblPlantsGene:GSBRNA2T00114421001Gene3D:3.40.50.10470GO:A0A078CHR3GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0044237InterPro:IF-2B-relatedInterPro:NagB/RpiA_transferase-likeKEGG:00270+5.3.1.23MetaCyc:PWY-4361
MetaCyc:PWY-7174PANTHER:PTHR10233PANTHER:PTHR10233:SF27PFAM:PF01008ProteinID:CDX74513ProteinID:CDX74513.1
SEG:segSUPFAM:SSF100950UniParc:UPI0004EEC4EDUniPathway:UPA00904MapMan:17.4.1.2.3.4:
Description
BnaA04g08760D
Coordinates
chrLK031801:+:1029492..1032302
Molecular Weight (calculated)
68529.1 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.329
Length
630 amino acids
Sequence
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSTH QPDPIASESH PVASSISPSG NSLSPVMIPP PRHNSSDTFP LRAAAAAASA VSPSSFSYST RRDFPDGSMT
101: ASPGRVSRAS FSKPSSSLPG VGMDSMAAAK SSSVPASGLT TVSVVNMPPG LSEKESDQKK NSKPLKEKTT KAERRALQEA QRAAKAAAKA EGGKAPLVSS
201: GSVASTNVKA AKPAKPSSQK NDVAVAAPGP SEKKGGQTEK DRKKDAPHPR MQYDDESRVV KAKRRAVVKQ TEAKNRVELF RHLPQYEHGT QLPDLETKFF
301: QLDPMHPAVY KVGLQYLSGD ISGGNARCIA MLQAFQEVVK DYSTPSEKTL NRDMTAKISS YVSFLIECRP LSVSMGNAIR FVKNRIAKLP ITLSESEAKA
401: ALQSDIERFI NEKIIMADTV IVKHAVTKIR DGDVLLTYGS PTAVEMVLLH AHELKKKFRV LVVDSRPKLE GQLLLRRLIK RGINCTYTHI NAVSYIMHEV
501: TKVFLGASSV LSNGTVYSRV GTACVAMVAS AFRVPVLVCC EAYKFHERVQ LDSICSNELG DPNAISKVHG REDINYLDGL TNNANLQFLN LMYDATPSDY
601: ISMIITDYGM VPPTSVPVIV REYQKEHSLV
Best Arabidopsis Sequence Match ( AT5G38640.1 )
(BLAST)
001: MESRRNPRAV VDPKVRQVGF FTSSQPDSST QQQQPDPIAA TSASSSSSTI SPSGNSLSPV MIPPPRLNSS DTFPLRVAVA GAAASAVSPS SFSYSSRRDF
101: PDGSTTASPG RHSRGSFVKS SVPVASSLPG IGMDSMAAAK SSSVPASGLT TVSVVTMPPG LSEKASGMEV QSDQKKPLKE KTTKAERRAI QEAQRAAKAA
201: AKADGGKVAP VSSASVASTS VKAAKPAKAT SQKNDVAVAT GAAEKKGGPS EKDRKKDAPH PRMQYDDESR VVKAKRRAVV KQTEAKNRVE LFRHLPQYEH
301: GTQLPDLETK FFQLDPMHPA VYKVGLQYLS GDISGGNARC IAMLQAFQEV VKDYSTPPEK SLNRDMTAKI SSYVSFLIEC RPLSISMGNA IRFVKNRIAK
401: LPITLSESEA KATLQSDIER FINEKIIVAD TVIVKHAVTK IRDGDVLLTY GSPTAVEMVI LHAHELRKKF RVLVVDSRPK LEGQLLLRRL IKRGINCTYT
501: HINAISYIMH EVTKVFLGAS SVLSNGTVYS RVGTACVAMV ANAFRVPVLV CCEAYKFHER VQLDSICSNE LGDPNAISEV HGREDINYLD GLTNNANLQF
601: LNLMYDATPS DYISMIITDY GMVPPTSVPV IVREYQKEHL LV
Arabidopsis Description
At5g38640 [Source:UniProtKB/TrEMBL;Acc:Q9FFV8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.