CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY01389
CDY29370
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60080.1	CDY01389	AT2G25700.1	21798944
AT1G60080.1	CDY29370	AT2G25700.1	21798944
AT1G60080.1	CDY43408	AT2G25700.1	21798944
AT1G60080.1	CDY44209	AT2G25700.1	21798944
AT1G60080.1	CDY63159	AT2G25700.1	21798944
AT1G60080.1	CDY67544	AT2G25700.1	21798944
AT1G60080.1	CDY68971	AT2G25700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027816.1-P	Field mustard	cytosol	99.34	99.34
CDY63123	Canola	cytosol	99.34	99.34
AT1G60080.1	Thale cress	cytosol	88.7	88.41
KRH45053	Soybean	cytosol, nucleus	70.43	70.2
KRH01295	Soybean	plastid	20.93	70.0
KRH16280	Soybean	nucleus	68.77	67.43
VIT_08s0007g08550.t01	Wine grape	cytosol	69.1	66.88
CDY33620	Canola	cytosol	44.19	66.5
PGSC0003DMT400019417	Potato	cytosol	66.11	65.68
GSMUA_Achr7P02490_001	Banana	cytosol	62.46	65.05
Solyc10g080130.1.1	Tomato	cytosol	66.45	64.94
Solyc06g075390.2.1	Tomato	nucleus	66.78	62.23
Os11t0311300-03	Rice	cytosol	58.47	57.52
TraesCS4A01G239300.1	Wheat	cytosol, nucleus, plastid	58.14	57.19
TraesCS4B01G075600.1	Wheat	cytosol, nucleus, plastid	57.81	56.86
TraesCS4D01G074300.1	Wheat	cytosol	57.81	56.86
Zm00001d044450_P001	Maize	cytosol	22.59	56.2
PGSC0003DMT400060984	Potato	golgi	60.8	55.62
Zm00001d021033_P001	Maize	cytosol	25.91	54.93
Zm00001d049854_P001	Maize	cytosol	24.92	54.74
EES15299	Sorghum	cytosol	55.48	54.58
KRH01293	Soybean	cytosol, nucleus	22.26	54.03
HORVU4Hr1G012650.14	Barley	cytosol	58.14	51.93
KRH01298	Soybean	cytosol, nucleus, plastid	18.6	50.45
Zm00001d031643_P001	Maize	cytosol	56.48	47.75
Zm00001d049855_P002	Maize	nucleus	34.22	47.69
CDY22130	Canola	cytosol	24.92	26.04
CDY35960	Canola	cytosol	24.92	25.6
CDY28020	Canola	cytoskeleton, cytosol, nucleus	24.25	23.17
CDY70752	Canola	cytosol	24.58	21.02
CDX98419	Canola	nucleus	24.25	17.76
CDX67830	Canola	nucleus	23.92	17.52
CDY41161	Canola	cytosol	24.25	16.74
CDX71803	Canola	nucleus	23.92	16.36

Protein Annotations

EnsemblPlants:CDY56983	EnsemblPlantsGene:GSBRNA2T00020402001	Gene3D:3.30.230.70	InterPro:ExoRNase_PH_dom1	InterPro:ExoRNase_PH_dom2	InterPro:ExoRNase_PH_dom2_sf
InterPro:IPR027408	InterPro:PNPase/RNase_PH_dom_sf	InterPro:Ribosomal_S5_D2-typ_fold	PANTHER:PTHR11097	PANTHER:PTHR11097:SF20	PFAM:PF01138
PFAM:PF03725	ProteinID:CDY56983	ProteinID:CDY56983.1	SEG:seg	SUPFAM:SSF54211	SUPFAM:SSF55666
UniParc:UPI0004EF03A7	UniProt:A0A078J3E8	MapMan:16.8.1.1.4	:	:	:

Description

BnaCnng31490DBnaCnng31490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3E8]

Coordinates

chrLK033539:+:23583..25587

Molecular Weight (calculated)

32537.2 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.022

Length

301 amino acids

Sequence
(BLAST)

001: MGLPDSSQDL STEMDVDAFR RLFPLRFFER HLSESLRPDG RPLGKARDTI VNLGLVSSAD GSALAKIGST TMLAAIRMEV MSPSTDSPDE GCIAVEFHMP
101: PICSPTVRPG RPADEAPVIS KRLSDIFSSC DMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLSA VAAFSNLQIP VVALNDNGRI VAINGEQEEN
201: ASIKEKEAVN KEKRKLTLKN IPFALTCILH KKYILADPTA EEESIMDTLV TVVLDSSDQI VSFNKSGGNA LAGSSAIKSC VELARKRGKE LKQILGEMDI
301: D

Best Arabidopsis Sequence Match ( AT1G60080.1 )
(BLAST)

001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID

Arabidopsis Description

3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.