Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01293 | Soybean | cytosol, nucleus | 29.0 | 46.77 |
| CDY56983 | Canola | cytosol | 66.5 | 44.19 |
| Bra027816.1-P | Field mustard | cytosol | 66.0 | 43.85 |
| CDY63123 | Canola | cytosol | 66.0 | 43.85 |
| AT1G60080.1 | Thale cress | cytosol | 61.0 | 40.4 |
| Zm00001d049855_P002 | Maize | nucleus | 36.0 | 33.33 |
| KRH45053 | Soybean | cytosol, nucleus | 47.0 | 31.13 |
| GSMUA_Achr7P02490_001 | Banana | cytosol | 44.0 | 30.45 |
| KRH16280 | Soybean | nucleus | 46.5 | 30.29 |
| VIT_08s0007g08550.t01 | Wine grape | cytosol | 47.0 | 30.23 |
| Solyc10g080130.1.1 | Tomato | cytosol | 45.5 | 29.55 |
| PGSC0003DMT400019417 | Potato | cytosol | 44.0 | 29.04 |
| Os11t0311300-03 | Rice | cytosol | 43.0 | 28.1 |
| Solyc06g075390.2.1 | Tomato | nucleus | 45.0 | 27.86 |
| PGSC0003DMT400060984 | Potato | golgi | 45.5 | 27.66 |
| TraesCS4A01G239300.1 | Wheat | cytosol, nucleus, plastid | 41.5 | 27.12 |
| TraesCS4D01G074300.1 | Wheat | cytosol | 41.5 | 27.12 |
| TraesCS4B01G075600.1 | Wheat | cytosol, nucleus, plastid | 41.0 | 26.8 |
| EES15299 | Sorghum | cytosol | 40.5 | 26.47 |
| HORVU4Hr1G012650.14 | Barley | cytosol | 42.0 | 24.93 |
| Zm00001d031643_P001 | Maize | cytosol | 40.0 | 22.47 |
| KRH01295 | Soybean | plastid | 8.5 | 18.89 |
| CDY22130 | Canola | cytosol | 22.0 | 15.28 |
| CDY35960 | Canola | cytosol | 21.0 | 14.33 |
| CDY28020 | Canola | cytoskeleton, cytosol, nucleus | 21.0 | 13.33 |
| CDY70752 | Canola | cytosol | 20.5 | 11.65 |
| CDX98419 | Canola | nucleus | 20.0 | 9.73 |
| CDX67830 | Canola | nucleus | 19.5 | 9.49 |
| CDY41161 | Canola | cytosol | 20.0 | 9.17 |
| CDX71803 | Canola | nucleus | 20.0 | 9.09 |
| KRH01298 | Soybean | cytosol, nucleus, plastid | 4.0 | 7.21 |
| Zm00001d021033_P001 | Maize | cytosol | 5.0 | 7.04 |
| Zm00001d049854_P001 | Maize | cytosol | 4.0 | 5.84 |
| Zm00001d044450_P001 | Maize | cytosol | 2.0 | 3.31 |
Protein Annotations
| EnsemblPlants:CDY33620 | EnsemblPlantsGene:GSBRNA2T00054953001 | Gene3D:3.30.230.70 | InterPro:ExoRNase_PH_dom2 | InterPro:ExoRNase_PH_dom2_sf | InterPro:IPR027408 |
| InterPro:PNPase/RNase_PH_dom_sf | PANTHER:PTHR11097 | PANTHER:PTHR11097:SF20 | PFAM:PF03725 | ProteinID:CDY33620 | ProteinID:CDY33620.1 |
| SEG:seg | SUPFAM:SSF55666 | UniParc:UPI0004EE4F2F | UniProt:A0A078H4W5 | MapMan:35.2 | : |
Description
BnaC01g28510DBnaC01g28510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4W5]
Coordinates
chrLK032318:+:430086..432498
Molecular Weight (calculated)
21842.8 Da
IEP (calculated)
5.788
GRAVY (calculated)
-0.428
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRNIVTKGG ENKGISPAKA GSSDRTSRRE VRYETLNLAE SDGWAEVFQI QESLNHEKDI YCLNADGALY DAAVAAFSNL QIPVVALNDN GRIVSISGEE
101: EKNASITMKE AVNKEKRKLT HKNIPFSLTC KLHKKYILAD PTAEEESIMD TLVTVVLDSS DQIVAFNKSG GNALAGSSAI NQARKRGKEL KQILADMDID
101: EKNASITMKE AVNKEKRKLT HKNIPFSLTC KLHKKYILAD PTAEEESIMD TLVTVVLDSS DQIVAFNKSG GNALAGSSAI NQARKRGKEL KQILADMDID
001: MGIPDAAQDL STEMEVDAFR RIFPLRFFER HLSESLRPDG RQLGKARDTI VNLGLVSTAD GSALAKIGST TMLAAIRMEV MTPSTDSPDE GCIAIEFHMP
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
101: PICSPTVRPG RPAEAAPVIS KRLSDTILSS GMIDLKELCL VSGKAAWMGY LDIYCLDADG ALFDAALLAA VAAFSNLQIP IVALNDNGRI VAVTGEKDQD
201: NALITEKEAV NKEKRKLTLK NIPFSLTCIL HKNYILADPT TEEESIMDTL VTVVLDSSDQ MVSFYKSGGA ALAYSSAIKS CVELARKRAK ELKQILGEMD
301: ID
Arabidopsis Description
3'-5'-exoribonuclease family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUI4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.