Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29370 | Canola | cytosol | 96.27 | 96.27 |
| AT2G25700.1 | Thale cress | cytosol | 80.12 | 79.14 |
| AT1G20140.1 | Thale cress | cytosol | 80.12 | 79.14 |
| CDX68112 | Canola | cytosol | 71.43 | 76.16 |
| CDX85931 | Canola | cytosol | 71.43 | 76.16 |
| CDY39073 | Canola | cytosol | 73.91 | 74.38 |
| CDY13521 | Canola | cytosol | 73.91 | 74.38 |
| CDX73212 | Canola | cytosol | 72.05 | 72.05 |
| CDX87650 | Canola | cytosol | 71.43 | 71.43 |
| CDY67544 | Canola | cytosol | 70.81 | 70.81 |
| CDY63159 | Canola | cytosol | 70.19 | 70.19 |
| CDY01389 | Canola | cytosol | 70.19 | 70.19 |
| CDY40611 | Canola | cytosol | 60.25 | 64.67 |
| CDY40610 | Canola | cytosol | 61.49 | 63.46 |
| CDX93699 | Canola | cytosol | 62.73 | 63.12 |
| CDX93698 | Canola | cytosol | 60.25 | 62.18 |
| CDX80590 | Canola | cytosol | 60.87 | 60.87 |
| CDY43408 | Canola | cytosol | 56.52 | 59.87 |
| CDY68971 | Canola | cytosol | 55.9 | 59.21 |
| CDX77280 | Canola | cytosol | 57.76 | 58.49 |
| CDY16470 | Canola | cytosol | 56.52 | 57.23 |
| CDY69121 | Canola | cytosol | 45.96 | 56.49 |
| CDX89042 | Canola | cytosol | 55.28 | 55.97 |
| CDY45767 | Canola | cytosol | 50.93 | 53.25 |
| CDY03015 | Canola | cytosol | 49.07 | 52.32 |
| CDY14922 | Canola | cytosol | 54.04 | 51.79 |
| CDY04140 | Canola | cytosol | 50.93 | 51.57 |
| CDY17409 | Canola | cytosol | 49.69 | 50.31 |
| CDX96963 | Canola | cytosol | 53.42 | 45.5 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078I3T1 | UniProt:A0A078I3T1 | EnsemblPlants:CDY44209 | ProteinID:CDY44209 |
| ProteinID:CDY44209.1 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00079701001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 |
| PANTHER:PTHR11165:SF89 | InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 |
| SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EBFCBE |
Description
BnaC05g15660DBnaC05g15660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3T1]
Coordinates
chrLK032582:+:212778..213784
Molecular Weight (calculated)
17972.1 Da
IEP (calculated)
4.155
GRAVY (calculated)
-0.368
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKIILKSS DGESFEVDEA VALESQTIKH MVEDDCIADG IPLPNVTSAI LAKVIEYCKK HVDAAAEANA GDKDIYGNTE DTELKNWDTE FAKVDQPTLF
101: DLILAANYLN ITGLLDLTCK TVADMIVGKT PAQMREHFNI KNDYTPEEEE EVRKENAWAF E
101: DLILAANYLN ITGLLDLTCK TVADMIVGKT PAQMREHFNI KNDYTPEEEE EVRKENAWAF E
001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE
Arabidopsis Description
ASK3SKP1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.