CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX93698
CDX93699
CDY01389
CDY13521
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	CDY01389	AT1G20140.1	12169662
AT1G06110.1	CDY29370	AT1G20140.1	12169662
AT1G06110.1	CDY43408	AT1G20140.1	12169662
AT1G06110.1	CDY44209	AT1G20140.1	12169662
AT1G06110.1	CDY63159	AT1G20140.1	12169662
AT1G06110.1	CDY67544	AT1G20140.1	12169662
AT1G06110.1	CDY68971	AT1G20140.1	12169662
AT1G06110.1	CDX68112	AT1G75950.1	12169662
AT1G06110.1	CDX73212	AT1G75950.1	12169662
AT1G06110.1	CDX80590	AT1G75950.1	12169662
AT1G06110.1	CDX85931	AT1G75950.1	12169662
AT1G06110.1	CDX87650	AT1G75950.1	12169662
AT1G06110.1	CDY13521	AT1G75950.1	12169662
AT1G06110.1	CDY39073	AT1G75950.1	12169662
AT1G06110.1	CDX77280	AT3G60010.1	12169662
AT1G06110.1	CDX93698	AT3G60010.1	12169662
AT1G06110.1	CDX93699	AT3G60010.1	12169662
AT1G06110.1	CDY16470	AT3G60010.1	12169662
AT1G06110.1	CDY40610	AT3G60010.1	12169662
AT1G06110.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47716	Canola	cytosol	79.03	90.26
CDY15562	Canola	cytosol	70.51	72.34
CDX86535	Canola	cytosol	71.66	71.99
AT1G06110.1	Thale cress	cytosol	71.43	71.1
VIT_05s0102g01140.t01	Wine grape	cytosol	53.69	52.48
PGSC0003DMT400042138	Potato	cytosol	52.77	51.69
KRH29609	Soybean	cytosol	52.3	51.24
Solyc06g053340.2.1	Tomato	cytosol	51.84	50.79
KRH24605	Soybean	cytosol	50.92	49.89
VIT_05s0102g01150.t01	Wine grape	cytosol	52.07	49.02
GSMUA_Achr1P13390_001	Banana	cytosol	44.7	46.86
Os11t0265200-00	Rice	extracellular	46.31	43.98
TraesCS4B01G084200.1	Wheat	cytosol	44.93	43.33
TraesCS4D01G082100.1	Wheat	cytosol	44.47	43.08
EES09667	Sorghum	cytosol	44.47	42.98
TraesCS4A01G231800.1	Wheat	cytosol	44.24	42.86
HORVU4Hr1G014490.3	Barley	cytosol, plastid	44.47	42.42
Zm00001d049083_P002	Maize	cytosol	42.17	40.67
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	37.56	36.88

Protein Annotations

Gene3D:2.60.40.1470	MapMan:35.1	UniProt:A0A078FAV2	InterPro:ApaG_domain	InterPro:ApaG_sf	EnsemblPlants:CDY10172
ProteinID:CDY10172	ProteinID:CDY10172.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00031987001	InterPro:IPR007474	InterPro:IPR036767	InterPro:Knr4/Smi1-like_dom	PFAM:PF04379	PFAM:PF09346
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF81383	UniParc:UPI0004EEA5CB
SEG:seg	:	:	:	:	:

Description

BnaC05g04150DBnaC05g04150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAV2]

Coordinates

chrLK032001:-:381507..383304

Molecular Weight (calculated)

48696.1 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.123

Length

434 amino acids

Sequence
(BLAST)

001: MSLEDAEDLV LHIILSKVGP ENTARVACVS KRLQVSASEE SLWSIFCSLD LNISTPLHPH GDSAPSFKRA YQSWRESFVM YPWSLVKRVK HCWDSLKLWL
101: SLNFPEAEAT LRKGVTEDDL EELETALNVQ LPLTTRLLYR FVDGQELSSS SSSGVVDGGS LGLLGGYSSY WHKVNVYLLP LKEVVRETID VMAGDHNTIS
201: KNIVVVAVSA APSSKKMFFL DCTNGQLYTE NTSSHQMLPC VPESLVCING DQQQDAMLLW LEEHGRRLQT GAIKVREQDN IKSISLFPEI PPLCSISVSN
301: GVQVRASSVF MPEVSDHLDK PPVYSYACSI RMSLMPNFNR RHHSSWQMYS RHWVVRAYNA VIGDVDGELV LVQNPLLQAK EEEFVYRCIS QFPTSNLSVE
401: GSFTFVPGSL QDPKGPQFEV NVAEFPVKLP DYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.