Factsheet for Os11t0265200-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G084200.1	Wheat	cytosol	74.18	75.33
TraesCS4A01G231800.1	Wheat	cytosol	73.3	74.78
HORVU4Hr1G014490.3	Barley	cytosol, plastid	74.4	74.73
TraesCS4D01G082100.1	Wheat	cytosol	72.65	74.11
EES09667	Sorghum	cytosol	72.65	73.94
Zm00001d049083_P002	Maize	cytosol	68.49	69.56
GSMUA_Achr1P13390_001	Banana	cytosol	55.8	61.59
VIT_05s0102g01140.t01	Wine grape	cytosol	52.74	54.28
PGSC0003DMT400042138	Potato	cytosol	51.2	52.82
CDY15562	Canola	cytosol	48.14	52.01
Bra030639.1-P	Field mustard	cytosol	48.14	52.01
Solyc06g053340.2.1	Tomato	cytosol	50.11	51.69
CDX86535	Canola	cytosol	48.36	51.16
AT1G06110.1	Thale cress	cytosol	48.36	50.69
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	48.8	50.45
KRH29609	Soybean	cytosol	47.92	49.44
VIT_05s0102g01150.t01	Wine grape	cytosol	49.23	48.81
KRH24605	Soybean	cytosol	47.05	48.53
CDY10172	Canola	cytosol	43.98	46.31
CDY47716	Canola	cytosol	35.67	42.89
Bra015474.1-P	Field mustard	cytosol	37.2	42.82

Protein Annotations

Gene3D:2.60.40.1470	Gene3D:3.40.1580.10	MapMan:35.1	EntrezGene:4350244	ProteinID:AAX96082.1	ProteinID:ABA92495.2
InterPro:ApaG_domain	InterPro:ApaG_sf	ProteinID:BAT13527.1	InterPro:IPR007474	InterPro:IPR036767	InterPro:IPR037883
InterPro:Knr4/Smi1-like_dom	InterPro:Knr4/Smi1-like_sf	EnsemblPlantsGene:Os11g0265200	EnsemblPlants:Os11t0265200-00	PFAM:PF04379	PFscan:PS51087
PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	UniProt:Q53LT0	SMART:SM00860	SUPFAM:SSF110069	SUPFAM:SSF160631
UniParc:UPI00005094DF	RefSeq:XP_015615131.1	SEG:seg	:	:	:

Description

Similar to F-box-containing protein 2. (Os11t0265200-00)

Coordinates

chr11:-:9055846..9059363

Molecular Weight (calculated)

51084.4 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.163

Length

457 amino acids

Sequence
(BLAST)

001: MAAPPQPQPE PEPAAGGAGL EALEGLALDT VIAKAGARQA AALACASTRL RDAAGDDALW RRFCADDLAL HAPLAPDGRA LPSFKDAYKV WLESFGMYPL
101: PLVRRVKIFW SSLKSWLSEN FPEAHKTLNK GVSEAQIQSA EDDLGFKLPL PTKLLYRFCN GQLPLSEHHH ENMRMAHLGI IGGYVFYDHL INVHLSPLEQ
201: IVEETKEFYR EFYDQGVFNM TNLIIVATSW YRPKTFFLNC SDDQLYVGTI NLQDGEMLPC VPKSLIRPTN TDMPQDGLLL WLEEHLRRLQ NGMIKIRMLK
301: TSRYISLFPE ASPSCTSAMT NGVKVRASAV FAPEHPESRR PGAKCLYAYS IRLSVPEACM LGGVYYSSCQ LYSRHWIIRW RDRVVSDVNG EGVIGKYPLL
401: TTGQEEFVYE SCTPLPDSPG SVEGSFTFVP GKLSRPEGKP FEVTVAAFPL EIPEYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.