Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030639.1-P | Field mustard | cytosol | 81.42 | 83.92 |
| CDY15562 | Canola | cytosol | 81.19 | 83.69 |
| CDX86535 | Canola | cytosol | 80.5 | 81.25 |
| CDY10172 | Canola | cytosol | 71.1 | 71.43 |
| Bra015474.1-P | Field mustard | cytosol | 61.47 | 67.51 |
| CDY47716 | Canola | cytosol | 58.49 | 67.11 |
| VIT_05s0102g01140.t01 | Wine grape | cytosol | 62.16 | 61.04 |
| Solyc06g053340.2.1 | Tomato | cytosol | 60.32 | 59.37 |
| PGSC0003DMT400042138 | Potato | cytosol | 60.09 | 59.14 |
| KRH29609 | Soybean | cytosol | 57.8 | 56.88 |
| VIT_05s0102g01150.t01 | Wine grape | cytosol | 59.86 | 56.62 |
| KRH24605 | Soybean | cytosol | 56.42 | 55.53 |
| GSMUA_Achr1P13390_001 | Banana | cytosol | 48.62 | 51.21 |
| Os11t0265200-00 | Rice | extracellular | 50.69 | 48.36 |
| TraesCS4A01G231800.1 | Wheat | cytosol | 48.85 | 47.54 |
| TraesCS4B01G084200.1 | Wheat | cytosol | 48.85 | 47.33 |
| TraesCS4D01G082100.1 | Wheat | cytosol | 48.62 | 47.32 |
| EES09667 | Sorghum | cytosol | 48.39 | 46.99 |
| HORVU4Hr1G014490.3 | Barley | cytosol, plastid | 48.85 | 46.81 |
| Zm00001d049083_P002 | Maize | cytosol | 46.56 | 45.11 |
| Os11t0264700-01 | Rice | cytosol, peroxisome, plastid | 40.14 | 39.59 |
Protein Annotations
| Gene3D:2.60.40.1470 | MapMan:35.1 | EntrezGene:837120 | ProteinID:AAF80134.1 | ProteinID:AEE27940.1 | EMBL:AF419599 |
| ArrayExpress:AT1G06110 | EnsemblPlantsGene:AT1G06110 | RefSeq:AT1G06110 | TAIR:AT1G06110 | RefSeq:AT1G06110-TAIR-G | EnsemblPlants:AT1G06110.1 |
| TAIR:AT1G06110.1 | EMBL:AY099571 | InterPro:ApaG_domain | InterPro:ApaG_sf | EMBL:BT002142 | InterPro:F-box-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019005 |
| GO:GO:0019538 | InterPro:IPR007474 | InterPro:IPR036767 | InterPro:Knr4/Smi1-like_dom | RefSeq:NP_563759.1 | PFAM:PF04379 |
| PFAM:PF09346 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51087 |
| PANTHER:PTHR14289 | PANTHER:PTHR14289:SF26 | UniProt:Q9LND7 | Symbol:SKIP16 | SUPFAM:SSF110069 | SUPFAM:SSF160631 |
| SUPFAM:SSF81383 | UniParc:UPI00000AC06D | : | : | : | : |
Description
SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
Coordinates
chr1:-:1853059..1855378
Molecular Weight (calculated)
48978.6 Da
IEP (calculated)
5.309
GRAVY (calculated)
-0.151
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.