CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24605	Soybean	cytosol	91.87	91.87
VIT_05s0102g01140.t01	Wine grape	cytosol	64.56	64.41
PGSC0003DMT400042138	Potato	cytosol	62.3	62.3
CDY15562	Canola	cytosol	58.47	61.23
Solyc06g053340.2.1	Tomato	cytosol	61.17	61.17
Bra030639.1-P	Field mustard	cytosol	58.24	60.99
CDX86535	Canola	cytosol	58.01	59.49
VIT_05s0102g01150.t01	Wine grape	cytosol	61.17	58.79
AT1G06110.1	Thale cress	cytosol	56.88	57.8
CDY10172	Canola	cytosol	51.24	52.3
GSMUA_Achr1P13390_001	Banana	cytosol	48.53	51.93
TraesCS4B01G084200.1	Wheat	cytosol	49.21	48.44
TraesCS4D01G082100.1	Wheat	cytosol	48.98	48.44
TraesCS4A01G231800.1	Wheat	cytosol	48.98	48.44
Bra015474.1-P	Field mustard	cytosol	43.34	48.36
Os11t0265200-00	Rice	extracellular	49.44	47.92
HORVU4Hr1G014490.3	Barley	cytosol, plastid	48.98	47.69
CDY47716	Canola	cytosol	40.86	47.63
EES09667	Sorghum	cytosol	47.4	46.77
Zm00001d049083_P002	Maize	cytosol	45.6	44.89
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	37.02	37.1

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.60.40.1470	MapMan:35.1	EMBL:ACUP02006806	InterPro:ApaG_domain	InterPro:ApaG_sf
InterPro:F-box-like_dom_sf	EnsemblPlantsGene:GLYMA_11G126500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LJN6
InterPro:IPR007474	InterPro:IPR036767	EnsemblPlants:KRH29609	ProteinID:KRH29609	ProteinID:KRH29609.1	PFAM:PF04379
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383
UniParc:UPI000233D123	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:9618584..9622809

Molecular Weight (calculated)

50038.4 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.098

Length

443 amino acids

Sequence
(BLAST)

001: MGLESVGDLA IHVILSKLGA QDTARVACVS KRFCSSASDD TLWINHCFHE LALTQPLDHL GNPLSSFKEC YQAWRGAFVM YPWSLVKRVK RCWDKIKTWL
101: TNNFPEAEAT LCKGATEADI QELENVLKVK LPLPSRILYR FHNGQEIAKA DPETTTYGSS LGLIGGYSFY SHLVNVYLLP IRQIILETKQ TRRHLSFLRR
201: SKYVLVAASS TYSRKLFFLN CTNGQLYVGT RDLLTEGDII PCVPHDLINL HQELNISEQQ DAMLLWLEEH GRRLEHGFIK LHDKGNGKSI NLFPEEPPLC
301: SMAVTNGVKV RASALVIPEL IDLQDDLEKY LFAYSIRLSL EPQGCTINGM SFSSCQLHWR HWIIRANDIV ISDVNGEAVI GQYPLLRPGA QEFVYQSRMH
401: LPTPSGSIEG SFTFIPGRLA DPKGDPFLAT VARFPLQLPD YIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.