Factsheet for VIT_05s0102g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT1G06110.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g01150.t01	Wine grape	cytosol	91.67	88.29
KRH29609	Soybean	cytosol	64.41	64.56
PGSC0003DMT400042138	Potato	cytosol	63.74	63.88
Solyc06g053340.2.1	Tomato	cytosol	63.51	63.66
KRH24605	Soybean	cytosol	63.51	63.66
Bra030639.1-P	Field mustard	cytosol	60.59	63.59
CDY15562	Canola	cytosol	60.36	63.36
CDX86535	Canola	cytosol	60.59	62.27
AT1G06110.1	Thale cress	cytosol	61.04	62.16
GSMUA_Achr1P13390_001	Banana	cytosol	53.83	57.73
TraesCS4B01G084200.1	Wheat	cytosol	54.5	53.78
CDY10172	Canola	cytosol	52.48	53.69
TraesCS4D01G082100.1	Wheat	cytosol	53.38	52.9
TraesCS4A01G231800.1	Wheat	cytosol	53.38	52.9
HORVU4Hr1G014490.3	Barley	cytosol, plastid	54.05	52.75
Os11t0265200-00	Rice	extracellular	54.28	52.74
Bra015474.1-P	Field mustard	cytosol	44.37	49.62
EES09667	Sorghum	cytosol	50.0	49.44
CDY47716	Canola	cytosol	42.12	49.21
Zm00001d049083_P002	Maize	cytosol	47.3	46.67
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	40.32	40.5

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100256107	wikigene:100256107	EntrezGene:100261191	wikigene:100261191	Gene3D:2.60.40.1470
MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	ProteinID:CCB59883	ProteinID:CCB59883.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6HYW9	EMBL:FN596500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR007474	InterPro:IPR036767	EntrezGene:LOC100256107	wikigene:LOC100256107	EntrezGene:LOC100261191
wikigene:LOC100261191	PFAM:PF00646	PFAM:PF04379	PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26
SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383	UniParc:UPI000198358A	ArrayExpress:VIT_05s0102g01140	EnsemblPlantsGene:VIT_05s0102g01140
EnsemblPlants:VIT_05s0102g01140.t01	unigene:Vvi.24477	unigene:Vvi.418	RefSeq:XP_002271000	RefSeq:XP_002271000.1	RefSeq:XP_002271295
RefSeq:XP_002271295.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:23250873..23262930

Molecular Weight (calculated)

49273.4 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.009

Length

444 amino acids

Sequence
(BLAST)

001: MEMGLEDLGD LAINAIISKL DTKDTVAVSC VSKKLRVSAS EESLWLNHCS QDLGLSAPID PLGKPAPSFK ETYRLWRESF GMYPWPLVKR VKRCWDRLKN
101: WLSANFPEAD ATLRKGATEV EIEALENILK VKLPLPTRLL YRFCDGQELT DDVGGTALGS SLGIIGGYCF YDHLVNVCLL PLRQVILETK EITDQLGFST
201: TSKYVIVAAS STYIGKFFFL NCTTGQLYVG TRSLVSAGEM IPCVPNALIS PMHDSNTGQQ QDAMLLWLEE HVRRLQNGII KLRNEGMIRS INLFPEESPL
301: CSTAVTNGVQ VRASAVFIPE GCNLLDESHK YLFAYSIRMR LLPEGCIVNG TSFGSCQLNW RHWIIRANDH VVSEVNAEAV IGKYPLLYPG GEEFVYESCT
401: PLSSSQGSIE GAFTFVPGRL ADPKGSAFEV EVGRFPLQCP DYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.