Factsheet for Solyc06g053340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042138	Potato	cytosol	94.58	94.58
VIT_05s0102g01140.t01	Wine grape	cytosol	63.66	63.51
Bra030639.1-P	Field mustard	cytosol	58.47	61.23
KRH29609	Soybean	cytosol	61.17	61.17
CDY15562	Canola	cytosol	58.24	60.99
AT1G06110.1	Thale cress	cytosol	59.37	60.32
KRH24605	Soybean	cytosol	59.82	59.82
CDX86535	Canola	cytosol	58.24	59.72
VIT_05s0102g01150.t01	Wine grape	cytosol	61.4	59.0
GSMUA_Achr1P13390_001	Banana	cytosol	51.24	54.83
CDY10172	Canola	cytosol	50.79	51.84
Os11t0265200-00	Rice	extracellular	51.69	50.11
TraesCS4B01G084200.1	Wheat	cytosol	50.34	49.56
TraesCS4D01G082100.1	Wheat	cytosol	49.89	49.33
TraesCS4A01G231800.1	Wheat	cytosol	49.44	48.88
Bra015474.1-P	Field mustard	cytosol	43.57	48.61
CDY47716	Canola	cytosol	41.31	48.16
EES09667	Sorghum	cytosol	48.53	47.88
HORVU4Hr1G014490.3	Barley	cytosol, plastid	48.76	47.47
Zm00001d049083_P002	Maize	cytosol	45.37	44.67
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	40.63	40.72

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.60.40.1470	Gene3D:3.40.1580.10	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	InterPro:IPR001810	InterPro:IPR007474	InterPro:IPR036767
InterPro:IPR037883	UniProt:K4C621	InterPro:Knr4/Smi1-like_sf	PFAM:PF00646	PFAM:PF04379	PFscan:PS51087
PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc06g053340.2
EnsemblPlants:Solyc06g053340.2.1	UniParc:UPI000276749D	SEG:seg	:	:	:

Description

F-box protein SKIP16 [Source:Projected from Arabidopsis thaliana (AT1G06110) UniProtKB/Swiss-Prot;Acc:Q9LND7]

Coordinates

chr6:+:36089836..36096898

Molecular Weight (calculated)

49653.6 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.143

Length

443 amino acids

Sequence
(BLAST)

001: MDVERLGGLS MHIILSKLTP QDAASVACVS KRFRNWSSDD LLWSKFCADD LDLSSPIDPL GNPMPSFKAS YQTWREDFNQ YPWPLITRVK RCWDRLKEWL
101: AINFPEGLST LRKGASEEEI LELEKSLKVK LPLPTRVLYR FYDGQELSSE ESSGSAPGSL LGLMGGYSFY DHLVNVSLLP LHQMIIETKE TIRHIGLGNR
201: SKYVVVAASC GHNEKVFFLN CSTGQLNVGT RNLTTEGEVI PCVPSALISS VHNVKATQPQ DAMLLWLEEH VRRLQHGMIN VRKEGKVRSI SLFPEVPPLC
301: SLAVTNGVKV RASSVFVPEF STIQDEYEKS FFAYSIRMSL SPEGCIMNGM AFNSCQLYCR HWIIRCNDNV VDNVNGEAVI GKFPLLRPGE EEFVYQSCSS
401: QQDSPGSIEG SFTFVPGRLA DPKGSPFEAV VSRFPLVMPD YIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.