Factsheet for Bra030639.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	Bra012213.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra012214.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra012216.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra025795.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G06110.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G06110.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15562	Canola	cytosol	99.76	99.76
AT1G06110.1	Thale cress	cytosol	83.92	81.42
Bra015474.1-P	Field mustard	cytosol	63.12	67.25
VIT_05s0102g01140.t01	Wine grape	cytosol	63.59	60.59
PGSC0003DMT400042138	Potato	cytosol	62.17	59.37
Solyc06g053340.2.1	Tomato	cytosol	61.23	58.47
KRH29609	Soybean	cytosol	60.99	58.24
KRH24605	Soybean	cytosol	59.57	56.88
VIT_05s0102g01150.t01	Wine grape	cytosol	61.23	56.18
GSMUA_Achr1P13390_001	Banana	cytosol	50.59	51.69
Os11t0265200-00	Rice	extracellular	52.01	48.14
TraesCS4B01G084200.1	Wheat	cytosol	51.06	48.0
TraesCS4D01G082100.1	Wheat	cytosol	50.59	47.77
TraesCS4A01G231800.1	Wheat	cytosol	50.12	47.32
HORVU4Hr1G014490.3	Barley	cytosol, plastid	50.59	47.03
EES09667	Sorghum	cytosol	48.94	46.1
Zm00001d049083_P002	Maize	cytosol	47.28	44.44
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	40.19	38.46

Protein Annotations

Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	EnsemblPlantsGene:Bra030639	EnsemblPlants:Bra030639.1
EnsemblPlants:Bra030639.1-P	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR007474
InterPro:IPR036767	InterPro:Knr4/Smi1-like_dom	UniProt:M4EPB9	PFAM:PF04379	PFAM:PF09346	PFscan:PS51087
PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383	UniParc:UPI0002547117

Description

AT1G06110 (E=7e-106) SKIP16 | SKIP16 (SKP1/ASK-interacting protein 16); protein binding

Coordinates

chrA08:+:20983238..20984912

Molecular Weight (calculated)

47451.7 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.185

Length

423 amino acids

Sequence
(BLAST)

001: MGLEEAGDLV LHIILSKIGP ENTARVACVS KRLKVSASED SLWSIFCSLD LNISTPLGPH GDPSPSFKAA YQSCRESFRM YPWHLVKRVR RCWDNLKLWL
101: SLNFPEAEAT LRKGATEEDL EEFESALKIK LPLPTRLLYR FVDGQEPRLD GSLGLIGGYS VYSHDVNVYL LPLKEVIRET NETMSDLGVS NGSNFIVVAA
201: SATASLKMFF LDCSDGQLYT GTSTRQMLPC VPEINGDQQQ DAMLRWLEEH GRRLQSGVIK VREEDNVKSI SLFPEVPPLC SVAVTNGVQV RASSVFIPEV
301: SNLRAQPPAY WYAYSIRMSL MPEGCFLNGR HHSSCQLYWR HWIIRADDEV IDKVNGEAVI GKYPLLQAGE EEFVYESCSN FPTTSGSIEG SFTFIPGSLK
401: DPKGSQFEVK VEEFPLKLPD YIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.