CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049083_P002	Maize	cytosol	89.75	89.56
Os11t0265200-00	Rice	extracellular	73.94	72.65
TraesCS4A01G231800.1	Wheat	cytosol	71.05	71.21
TraesCS4D01G082100.1	Wheat	cytosol	70.16	70.31
TraesCS4B01G084200.1	Wheat	cytosol	70.38	70.22
HORVU4Hr1G014490.3	Barley	cytosol, plastid	71.05	70.11
GSMUA_Achr1P13390_001	Banana	cytosol	52.34	56.76
VIT_05s0102g01140.t01	Wine grape	cytosol	49.44	50.0
PGSC0003DMT400042138	Potato	cytosol	48.78	49.44
Bra030639.1-P	Field mustard	cytosol	46.1	48.94
CDY15562	Canola	cytosol	46.1	48.94
Solyc06g053340.2.1	Tomato	cytosol	47.88	48.53
AT1G06110.1	Thale cress	cytosol	46.99	48.39
CDX86535	Canola	cytosol	46.55	48.38
KRH29609	Soybean	cytosol	46.77	47.4
KRH24605	Soybean	cytosol	45.88	46.5
VIT_05s0102g01150.t01	Wine grape	cytosol	46.77	45.55
CDY10172	Canola	cytosol	42.98	44.47
CDY47716	Canola	cytosol	35.41	41.84
Bra015474.1-P	Field mustard	cytosol	36.75	41.56

Protein Annotations

Gene3D:2.60.40.1470	MapMan:35.1	EntrezGene:8064383	InterPro:ApaG_domain	InterPro:ApaG_sf	UniProt:C5Y205
EnsemblPlants:EES09667	ProteinID:EES09667	ProteinID:EES09667.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	InterPro:IPR007474
InterPro:IPR036767	PFAM:PF04379	PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	EnsemblPlantsGene:SORBI_3005G106200
SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383	unigene:Sbi.8459	UniParc:UPI0001A86769	RefSeq:XP_002450679.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:19916502..19922747

Molecular Weight (calculated)

49789.0 Da

IEP (calculated)

5.193

GRAVY (calculated)

-0.074

Length

449 amino acids

Sequence
(BLAST)

001: MASPPPPEAA PAEAGLESME GLVLDTVISR AGARPAAALA CASTRLRTAV ADDSLWRRFC AEDLGLDAPV DPEGQPLPSF QVAYKVWLES FGMYPLPMVK
101: RVKQFWTSMK TWLSENFPEA YKTLCKGVSE AQLKSAEDDL GFKLPMPTKL LYRFCNAQLP FSEDHDANKS ISTHGLIGGY AFYDHWVNVH LSPLEQIVEE
201: TKDFYREFPD VFNGRNFIVV ATSWFRPKTF LLDCSNGELY VGTYNLPIGG MLPCVPKALI KPAENDLAQD GLLLWLEEHL RRLQNGMIKT RMLMTSRYIS
301: LYPEAPPSCS SAVTNGIKVR SSAVFVPEHP GGPGEKFMFT YSIRMSVPEA CMLGGVYYSC CQLSSRHWTI RSCDRVVSDV SGGGVIGQYP VLLPGEDEFV
401: YESCTPLPKV PGSVEGSFSF VPGKLIRPEG KPFEVMVAPF PLEVPEYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.