Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G231800.1 | Wheat | cytosol | 97.1 | 97.1 |
TraesCS4B01G084200.1 | Wheat | cytosol | 94.42 | 94.0 |
HORVU4Hr1G014490.3 | Barley | cytosol, plastid | 91.74 | 90.33 |
Os11t0265200-00 | Rice | extracellular | 74.11 | 72.65 |
EES09667 | Sorghum | cytosol | 70.31 | 70.16 |
Zm00001d049083_P002 | Maize | cytosol | 66.96 | 66.67 |
GSMUA_Achr1P13390_001 | Banana | cytosol | 54.91 | 59.42 |
VIT_05s0102g01140.t01 | Wine grape | cytosol | 52.9 | 53.38 |
Bra030639.1-P | Field mustard | cytosol | 47.77 | 50.59 |
CDY15562 | Canola | cytosol | 47.77 | 50.59 |
PGSC0003DMT400042138 | Potato | cytosol | 50.0 | 50.56 |
CDX86535 | Canola | cytosol | 48.44 | 50.23 |
Solyc06g053340.2.1 | Tomato | cytosol | 49.33 | 49.89 |
KRH29609 | Soybean | cytosol | 48.44 | 48.98 |
KRH24605 | Soybean | cytosol | 48.21 | 48.76 |
AT1G06110.1 | Thale cress | cytosol | 47.32 | 48.62 |
VIT_05s0102g01150.t01 | Wine grape | cytosol | 49.11 | 47.72 |
CDY10172 | Canola | cytosol | 43.08 | 44.47 |
CDY47716 | Canola | cytosol | 35.27 | 41.58 |
Bra015474.1-P | Field mustard | cytosol | 36.38 | 41.06 |
Protein Annotations
EnsemblPlants:TraesCS4D01G082100.1 | EnsemblPlantsGene:TraesCS4D01G082100 | Gene3D:2.60.40.1470 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0019005 | InterPro:ApaG_domain | InterPro:ApaG_sf | InterPro:IPR007474 | InterPro:IPR036767 | ncoils:Coil |
PANTHER:PTHR14289 | PANTHER:PTHR14289:SF26 | PFAM:PF04379 | PFscan:PS51087 | SEG:seg | SUPFAM:SSF110069 |
SUPFAM:SSF160631 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:55559928..55564146
Molecular Weight (calculated)
49193.2 Da
IEP (calculated)
5.935
GRAVY (calculated)
-0.057
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPTGPAA PAGLESMEGL ALDIIIAKAG ARPAAALACA STHLRAAVAE DAVWRSFCAR DLGLDAPLDP EDRPLPSFKD AYKVWSESFG MYPLPLVKRV
101: KLFWSSLKGW ISENFPEALR TLSKGASEAQ IRSAEDDLGF KLPMPTKLLY RFCNGQLPFS KNEDIRMAPL GIIGGYVFYN YNVNVHLSSL EQMVEETKEF
201: NLHLEEQGLP IGPNLALVAS SWYHPKTFLL NCSSGDLYVG TANLSAGEMM PCVPESLIKP TNSDMPQDGL LLWLEEHLRR LQNGMIKIRP LSTSRYICLY
301: PEASPLCSSA VTNGVKVRAS AVFVPEHPRR GHLGTHLYSY SIRLSVPEAC MLGGVYFSSC QLHSRHWIIR CKDTVVSDMH GEGVIGEHPL LLPGQDEFVY
401: ESCTPLNGSS GSVEGSFTFV PGRLTQPEGK PFDVTVAPFP LEVPDYIF
101: KLFWSSLKGW ISENFPEALR TLSKGASEAQ IRSAEDDLGF KLPMPTKLLY RFCNGQLPFS KNEDIRMAPL GIIGGYVFYN YNVNVHLSSL EQMVEETKEF
201: NLHLEEQGLP IGPNLALVAS SWYHPKTFLL NCSSGDLYVG TANLSAGEMM PCVPESLIKP TNSDMPQDGL LLWLEEHLRR LQNGMIKIRP LSTSRYICLY
301: PEASPLCSSA VTNGVKVRAS AVFVPEHPRR GHLGTHLYSY SIRLSVPEAC MLGGVYFSSC QLHSRHWIIR CKDTVVSDMH GEGVIGEHPL LLPGQDEFVY
401: ESCTPLNGSS GSVEGSFTFV PGRLTQPEGK PFDVTVAPFP LEVPDYIF
001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF
Arabidopsis Description
SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.