Factsheet for Zm00001d049083_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09667	Sorghum	cytosol	89.56	89.75
Os11t0265200-00	Rice	extracellular	69.56	68.49
TraesCS4A01G231800.1	Wheat	cytosol	67.56	67.86
HORVU4Hr1G014490.3	Barley	cytosol, plastid	68.0	67.25
TraesCS4B01G084200.1	Wheat	cytosol	67.11	67.11
TraesCS4D01G082100.1	Wheat	cytosol	66.67	66.96
GSMUA_Achr1P13390_001	Banana	cytosol	49.56	53.86
VIT_05s0102g01140.t01	Wine grape	cytosol	46.67	47.3
CDY15562	Canola	cytosol	44.44	47.28
Bra030639.1-P	Field mustard	cytosol	44.44	47.28
PGSC0003DMT400042138	Potato	cytosol	46.0	46.73
AT1G06110.1	Thale cress	cytosol	45.11	46.56
CDX86535	Canola	cytosol	44.67	46.53
KRH29609	Soybean	cytosol	44.89	45.6
Solyc06g053340.2.1	Tomato	cytosol	44.67	45.37
KRH24605	Soybean	cytosol	44.44	45.15
VIT_05s0102g01150.t01	Wine grape	cytosol	44.0	42.95
CDY10172	Canola	cytosol	40.67	42.17
CDY47716	Canola	cytosol	33.33	39.47
Bra015474.1-P	Field mustard	cytosol	34.67	39.29

Protein Annotations

EntrezGene:100273585	Gene3D:2.60.40.1470	MapMan:35.1	UniProt:A0A1D6PS68	ProteinID:AQK49555.1	InterPro:ApaG_domain
InterPro:ApaG_sf	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	InterPro:IPR007474	InterPro:IPR036767	PFAM:PF04379
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383
UniParc:UPI000844A1AE	EnsemblPlantsGene:Zm00001d049083	EnsemblPlants:Zm00001d049083_P002	EnsemblPlants:Zm00001d049083_T002	SEG:seg	:

Description

F-box protein SKIP16

Coordinates

chr4:-:15479800..15486890

Molecular Weight (calculated)

49991.2 Da

IEP (calculated)

4.766

GRAVY (calculated)

-0.003

Length

450 amino acids

Sequence
(BLAST)

001: MASQPPPEPA PAEAGLESME GLVLDTVISR AGARPAAALA CASTRLRTAV ADDSLWRRFC GEDLGLDAPV DPEGRPLPSF QVAYKVWSES FGMYPLPMVK
101: RVRQFWTSMK TWLSENFPEA YKTLCEGVSE AQLKSAEDDL GFKLPMPTKL LYRFCNAQLP FSEDHDTNKS ISTYGLIGGY AFYDHWVNVH LSPLEQIVEE
201: TKDFYREFPD VFHGRKFIVV ATSWFHPKTF LLDCSNGELY VGTYNLPIGG MLPCVPKALI KPAGNDLAQD GLLLWLEEHL RRLQSGMIKT RMLMASRYIS
301: LYPEAPPSCS SAVTNGIKVV ILHFIDSYLT IPMDDFLSLG LTYLIPIVPE ACMLGGVYYS SCQLCSRHWT IRSCDRVVSD VSGGGVIGEY PLLLPGEDEF
401: VYESCTPLPQ VPGSVEGSFS FVPGKLSRPE GKPFEVMVAP FPLDVPEYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.