Factsheet for HORVU4Hr1G014490.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G084200.1	Wheat	cytosol	91.87	92.89
TraesCS4A01G231800.1	Wheat	cytosol	90.77	92.19
TraesCS4D01G082100.1	Wheat	cytosol	90.33	91.74
Os11t0265200-00	Rice	extracellular	74.73	74.4
EES09667	Sorghum	cytosol	70.11	71.05
Zm00001d049083_P002	Maize	cytosol	67.25	68.0
GSMUA_Achr1P13390_001	Banana	cytosol	54.29	59.66
VIT_05s0102g01140.t01	Wine grape	cytosol	52.75	54.05
Bra030639.1-P	Field mustard	cytosol	47.03	50.59
CDY15562	Canola	cytosol	47.03	50.59
CDX86535	Canola	cytosol	47.69	50.23
PGSC0003DMT400042138	Potato	cytosol	48.79	50.11
KRH29609	Soybean	cytosol	47.69	48.98
AT1G06110.1	Thale cress	cytosol	46.81	48.85
Solyc06g053340.2.1	Tomato	cytosol	47.47	48.76
KRH24605	Soybean	cytosol	47.47	48.76
VIT_05s0102g01150.t01	Wine grape	cytosol	49.01	48.37
CDY10172	Canola	cytosol	42.42	44.47
CDY47716	Canola	cytosol	34.95	41.84
Bra015474.1-P	Field mustard	cytosol	36.04	41.31

Protein Annotations

Gene3D:2.60.40.1470	Gene3D:3.40.1580.10	MapMan:35.1	UniProt:A0A287NB62	InterPro:ApaG_domain	InterPro:ApaG_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	EnsemblPlantsGene:HORVU4Hr1G014490	EnsemblPlants:HORVU4Hr1G014490.3
InterPro:IPR007474	InterPro:IPR036767	InterPro:IPR037883	InterPro:Knr4/Smi1-like_sf	PFAM:PF04379	PFscan:PS51087
PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	UniParc:UPI000B464D9C	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:53045572..53051483

Molecular Weight (calculated)

50098.3 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.049

Length

455 amino acids

Sequence
(BLAST)

001: HATLMASPPT WPAAPTGLES MEGLALDTII AKAGARPAAA LACASTHLRA AVAEDAVWRS FCSRDLGLDA PLDPEDRPLP SFKDAYKVWS ESFGMYPLPL
101: VKRVKLFWSS LKSWISENFP EALRTLSKGA SEAQIRSAED DLGFKLPMPT KLLYRFCNGQ LPFSKNHFEN IRMAPLGIIG GYVFYDHNVN VHLSSLEQMV
201: EETKEFKFKL EDEGVPIGAN LALVASSWYH PKTFLLNCSS GELYVGTANL SAGEMMPCVP KSLVKPTNSD MPQDGLLLWL EEHLRRLQNG MIKIRPLKTS
301: RYICLYPEAS PLCSSAVTNG VKVRASAVFA PEHPHGVGRV GIYLYSYSIR LSVPEACMLG GVYFSSCQLH SRHWIIRCGD RVVSDVHGEG VIGEYPLLLP
401: GQDEFVYESC TPLNGSSGSV EGSFTFLPGR VTRPEGKPFN VTVAPFTLEV PDYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.