Factsheet for TraesCS4B01G084200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G082100.1	Wheat	cytosol	94.0	94.42
TraesCS4A01G231800.1	Wheat	cytosol	93.33	93.75
HORVU4Hr1G014490.3	Barley	cytosol, plastid	92.89	91.87
Os11t0265200-00	Rice	extracellular	75.33	74.18
EES09667	Sorghum	cytosol	70.22	70.38
Zm00001d049083_P002	Maize	cytosol	67.11	67.11
GSMUA_Achr1P13390_001	Banana	cytosol	55.56	60.39
VIT_05s0102g01140.t01	Wine grape	cytosol	53.78	54.5
Bra030639.1-P	Field mustard	cytosol	48.0	51.06
CDY15562	Canola	cytosol	48.0	51.06
PGSC0003DMT400042138	Potato	cytosol	50.22	51.02
CDX86535	Canola	cytosol	48.67	50.69
Solyc06g053340.2.1	Tomato	cytosol	49.56	50.34
KRH24605	Soybean	cytosol	48.44	49.21
KRH29609	Soybean	cytosol	48.44	49.21
AT1G06110.1	Thale cress	cytosol	47.33	48.85
VIT_05s0102g01150.t01	Wine grape	cytosol	50.0	48.81
CDY10172	Canola	cytosol	43.33	44.93
CDY47716	Canola	cytosol	35.78	42.37
Bra015474.1-P	Field mustard	cytosol	37.11	42.07

Protein Annotations

Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0019005	InterPro:IPR007474	InterPro:IPR036767	PFAM:PF04379
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	EnsemblPlantsGene:TraesCS4B01G084200
EnsemblPlants:TraesCS4B01G084200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:82600088..82604177

Molecular Weight (calculated)

49274.2 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.055

Length

450 amino acids

Sequence
(BLAST)

001: MASPPTGPAA PAGLESMEGL ALDTIIAKAG ARPAAALACA STHLRAAVAE DAVWRSFCAR DLGLDAPLDP EDRPLPSFKD AYKVWSESFG MYPLPLVKRV
101: KLFWSSLKGW ISENFPEALR TLSKGASEAQ IRSAEDDLGF KLPMPTKLLY RFCNGQLPFS RNHFEDVRMA PLGIIGGYVF YDHSVNVHLS SLEQMVEETK
201: EFNLDLEEQG LPIGPNLALV ASSWYHPKTF ILNCSSGDLY VGTANLSAGE MMPCVPKSLI KPTDSDMPQD GLLLWLEEHL RRLQNGMIKI RPLKTSRYIC
301: LYPEASPLCS SAVTNGVKVR ASAVFAPEHP YGGHPGTYLY SYSIRLSVPE ACMLGGVYFS SCQLHSRHWI IRCKDTVVSD VNGEGVIGKF PLLLPGQDEF
401: VYESCTPLNG SSGSVEGSFT FVPGRVTQPE GKPFNVTVAP FPLQVPDYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.