CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29609	Soybean	cytosol	91.87	91.87
VIT_05s0102g01140.t01	Wine grape	cytosol	63.66	63.51
PGSC0003DMT400042138	Potato	cytosol	60.72	60.72
Solyc06g053340.2.1	Tomato	cytosol	59.82	59.82
CDY15562	Canola	cytosol	57.11	59.81
Bra030639.1-P	Field mustard	cytosol	56.88	59.57
CDX86535	Canola	cytosol	56.88	58.33
VIT_05s0102g01150.t01	Wine grape	cytosol	59.82	57.48
AT1G06110.1	Thale cress	cytosol	55.53	56.42
GSMUA_Achr1P13390_001	Banana	cytosol	48.53	51.93
CDY10172	Canola	cytosol	49.89	50.92
TraesCS4B01G084200.1	Wheat	cytosol	49.21	48.44
TraesCS4D01G082100.1	Wheat	cytosol	48.76	48.21
TraesCS4A01G231800.1	Wheat	cytosol	48.53	47.99
HORVU4Hr1G014490.3	Barley	cytosol, plastid	48.76	47.47
Bra015474.1-P	Field mustard	cytosol	42.21	47.1
Os11t0265200-00	Rice	extracellular	48.53	47.05
CDY47716	Canola	cytosol	39.73	46.32
EES09667	Sorghum	cytosol	46.5	45.88
Zm00001d049083_P002	Maize	cytosol	45.15	44.44
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	37.47	37.56

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100809876	Gene3D:2.60.40.1470	MapMan:35.1	EMBL:ACUP02007179	InterPro:ApaG_domain
InterPro:ApaG_sf	EMBL:BT093958	UniProt:C6T901	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_12G051100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR007474	InterPro:IPR036767
EnsemblPlants:KRH24605	ProteinID:KRH24605	ProteinID:KRH24605.1	PFAM:PF00646	PFAM:PF04379	PFscan:PS50181
PFscan:PS51087	PANTHER:PTHR14289	PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF160631	SUPFAM:SSF81383
UniParc:UPI0001B1643B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:3678681..3683056

Molecular Weight (calculated)

49846.2 Da

IEP (calculated)

7.246

GRAVY (calculated)

-0.046

Length

443 amino acids

Sequence
(BLAST)

001: MGLESVGDLA INVILKKLGA QDIARVACVS KRFSSSASDD TLWINLCFNE LALTQPLDHL GNPLSSFKEC YLAWRGAFVM YPWSLVKRVK RCWDRIKTWL
101: TNNFPEAEAT LCKGATEADI QELENVLKVK LPLPTRILYR FHNGQEFAKA DPETSTFGRS LGLIGGYSFY GHLVNVYLLP ICQIILETQQ TRRRLSFLRR
201: SKYVLVAASS TYSRKLFFLN CTNGQLYVGT RSPLTERDII PCVPHDLISL HQELNSSEQQ DAMLLWLEEH GRRLEHGFIK LHDEGNGKSI NLFPEEPHIC
301: STAVTNGVKV RASALVIPEL MDLQDDLGEY LFAYSIRLSL EPQGCIINGM SFSSCQLHWR HWIIRANDIV ISDVSGKAVI GQFPLLRPGA QEFVYQSCTP
401: LPTPSGSIEG SFTFIPGRLA DPKGDPFLAT VARFPLQLPD YIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.