Factsheet for TraesCS4A01G231800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G082100.1	Wheat	cytosol	97.1	97.1
TraesCS4B01G084200.1	Wheat	cytosol	93.75	93.33
HORVU4Hr1G014490.3	Barley	cytosol, plastid	92.19	90.77
Os11t0265200-00	Rice	extracellular	74.78	73.3
EES09667	Sorghum	cytosol	71.21	71.05
Zm00001d049083_P002	Maize	cytosol	67.86	67.56
GSMUA_Achr1P13390_001	Banana	cytosol	55.13	59.66
VIT_05s0102g01140.t01	Wine grape	cytosol	52.9	53.38
PGSC0003DMT400042138	Potato	cytosol	49.78	50.34
Bra030639.1-P	Field mustard	cytosol	47.32	50.12
CDY15562	Canola	cytosol	47.32	50.12
CDX86535	Canola	cytosol	47.99	49.77
Solyc06g053340.2.1	Tomato	cytosol	48.88	49.44
KRH29609	Soybean	cytosol	48.44	48.98
AT1G06110.1	Thale cress	cytosol	47.54	48.85
KRH24605	Soybean	cytosol	47.99	48.53
VIT_05s0102g01150.t01	Wine grape	cytosol	49.11	47.72
CDY10172	Canola	cytosol	42.86	44.24
CDY47716	Canola	cytosol	35.04	41.32
Bra015474.1-P	Field mustard	cytosol	36.38	41.06

Protein Annotations

EnsemblPlants:TraesCS4A01G231800.1	EnsemblPlantsGene:TraesCS4A01G231800	Gene3D:2.60.40.1470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0019005	InterPro:ApaG_domain	InterPro:ApaG_sf	InterPro:IPR007474	InterPro:IPR036767	PANTHER:PTHR14289
PANTHER:PTHR14289:SF26	PFAM:PF04379	PFscan:PS51087	SEG:seg	SUPFAM:SSF110069	SUPFAM:SSF160631
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:541361828..541366225

Molecular Weight (calculated)

49363.5 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.052

Length

448 amino acids

Sequence
(BLAST)

001: MASPPTGPAA PAGLESMEGL ALDTIIAKAG ARPAAVLACA STHLRAAVAE DAVWRNFCAR DLGLDAPLDP EDRPLPSFKD AYKVWSESFG MYPLPLVKRV
101: KLFWSSLKGW ISENFPEALR TLSKGVSEAQ IRSAEDDLGF KLPMPTKLLY RFCNGQLPFS KNEDVRMAPL GIIGGYLFYN YIVNVHLSSL EQMVEETKEF
201: NFHLEEQGLP IGPNLALVAS SWYHPKTFLL NCSSGELYVG TANLSAGEMM PCVPKSLIKP TNSDMPQDGL LLWLEEHLRR LQNGMIKIRP LKTSRYICLY
301: PEASPLCSSA VTNGVKVRAS AVFVPEHPRR GHVGTHLYSY SIRLSVPEAC MLGGVYFSSC QLHSRHWIIR CKDTVVSDMH GEGVIGEYPL LLPGQDEFVY
401: ESCTPLNGSS GSVEGSFTFV PGRLTQPEGK PFDVTVAPFP LEVPDYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.