Factsheet for Bra015474.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06110.1	Bra012213.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra012214.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra012216.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra025795.1-P	AT1G20140.1	12169662
AT1G06110.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G06110.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G06110.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G06110.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47716	Canola	cytosol	92.44	96.58
Bra030639.1-P	Field mustard	cytosol	67.25	63.12
AT1G06110.1	Thale cress	cytosol	67.51	61.47
PGSC0003DMT400042138	Potato	cytosol	49.62	44.47
VIT_05s0102g01140.t01	Wine grape	cytosol	49.62	44.37
Solyc06g053340.2.1	Tomato	cytosol	48.61	43.57
KRH29609	Soybean	cytosol	48.36	43.34
KRH24605	Soybean	cytosol	47.1	42.21
GSMUA_Achr1P13390_001	Banana	cytosol	43.58	41.79
VIT_05s0102g01150.t01	Wine grape	cytosol	47.61	41.0
Os11t0265200-00	Rice	extracellular	42.82	37.2
TraesCS4B01G084200.1	Wheat	cytosol	42.07	37.11
EES09667	Sorghum	cytosol	41.56	36.75
TraesCS4A01G231800.1	Wheat	cytosol	41.06	36.38
TraesCS4D01G082100.1	Wheat	cytosol	41.06	36.38
HORVU4Hr1G014490.3	Barley	cytosol, plastid	41.31	36.04
Zm00001d049083_P002	Maize	cytosol	39.29	34.67
Os11t0264700-01	Rice	cytosol, peroxisome, plastid	34.76	31.22

Protein Annotations

Gene3D:2.60.40.1470	MapMan:35.1	InterPro:ApaG_domain	InterPro:ApaG_sf	EnsemblPlantsGene:Bra015474	EnsemblPlants:Bra015474.1
EnsemblPlants:Bra015474.1-P	ncoils:Coil	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR007474	InterPro:IPR036767	UniProt:M4DG51	PFAM:PF04379	PFscan:PS51087	PANTHER:PTHR14289
PANTHER:PTHR14289:SF26	SUPFAM:SSF110069	SUPFAM:SSF81383	UniParc:UPI000254530E	SEG:seg	:

Description

AT1G06110 (E=1e-107) SKIP16 | SKIP16 (SKP1/ASK-interacting protein 16); protein binding

Coordinates

chrA10:+:1564998..1566805

Molecular Weight (calculated)

44442.1 Da

IEP (calculated)

4.623

GRAVY (calculated)

-0.087

Length

397 amino acids

Sequence
(BLAST)

001: MSLEDAEDLV LHMILSKVGP ENTARVACVS KRLQVSASEE SLWSIFCSLD LNISTPLHDY IPMEILSFLQ EATLRKGVTE DDLEELETAL NVQLPLTTRL
101: LYRFVDGQEL SSSSSSAGVD EGPLGLIGGY SAYWHKVNVY LLPLKEVVRQ TIDIMAGDHN TISKNIVVVA VSAAPSSKKM FFLDCTNGQL YTENTSSHQM
201: LPCVPESLVC INGDQQQDAM LLWLEEHGRR LQTGATKVRE QDNIKSISLF PEIPPLCSIF VTNGVQVRAS SVFMPEVSNH LDNPPVYSYA CSIRMSLMPN
301: FNRRHRSSWQ MYSRHWVVRA DDAVIGDVDG EVVLLKNPLL QAKEEEFVYR CISQFPTSNL SVEGSFTFVP GSLQDPKEPQ FEVNVAEFPV KLPDYIF

Best Arabidopsis Sequence Match ( AT1G06110.1 )
(BLAST)

001: MGLEDAGDLV LHIVLSKIGP ENTARVACVS KRLKVSASEE SLWSIFCSND LNISTPLDPH GDPAPSFKRA YQLWRESFRM YPWNLVKRVR LCWDNLKQWL
101: TLNFPEAKAT LRKGVTEDDL QEFETSLKVK LPLPTRLLYR FVDGQELSSP NGLDGSLGLI GGYSAYSHDV NVYLLPLKEV MRETKESFMR DLGFSSRLDL
201: IVMAASVVAS LKIFLLDCTT GQLFTGTSNR QLLPCVPDAL VRSVHDTNGD QQQDAMLLWL EEHGRRLQTG TINVRQQNNV KSISLFPEIP PLCSVSVTNG
301: VQVRASSVFI PEISNLRDQP PAYWYAYSIR MSLMPEGCIL NGTHHSSCQL YWRHWVIRAD NEVIDNVNGE AVIGKYPLLQ AGEEEFVYES CSSFPTTAGS
401: IDGSFTFVPG SLRDPKGSQF EVKVVEFPLE LPDYIF

Arabidopsis Description

SKIP16F-box protein SKIP16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.