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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • golgi 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:golgi
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra000729.1-P
Bra000842.1-P
Bra000874.1-P
Bra001900.1-P
Bra002686.1-P
Bra003518.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra005000.1-P
Bra007494.1-P
Bra007720.1-P
Bra007843.1-P
Bra008345.1-P
Bra009835.1-P
Bra010985.1-P
Bra012486.1-P
Bra013201.1-P
Bra013532.1-P
Bra013776.1-P
Bra014378.1-P
Bra015154.1-P
Bra015474.1-P
Bra015630.1-P
Bra017044.1-P
Bra017045.1-P
Bra017339.1-P
Bra017407.1-P
Bra017949.1-P
Bra020625.1-P
Bra020714.1-P
Bra020754.1-P
Bra024392.1-P
Bra024763.1-P
Bra024801.1-P
Bra024824.1-P
Bra024825.1-P
Bra024827.1-P
Bra024867.1-P
Bra024868.1-P
Bra025080.1-P
Bra025177.1-P
Bra026575.1-P
Bra026609.1-P
Bra026645.1-P
Bra027000.1-P
Bra027603.1-P
Bra027618.1-P
Bra029137.1-P
Bra030038.1-P
Bra030269.1-P
Bra030346.1-P
Bra030639.1-P
Bra030690.1-P
Bra031582.1-P
Bra032820.1-P
Bra033585.1-P
Bra033886.1-P
Bra034004.1-P
Bra034191.1-P
Bra034254.1-P
Bra035198.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra036353.1-P
Bra036542.1-P
Bra037120.1-P
Bra037508.1-P
Bra038977.1-P
Bra039878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75950.1 Bra015474.1-P AT1G06110.1 12169662
AT1G75950.1 Bra030639.1-P AT1G06110.1 12169662
AT1G75950.1 Bra017949.1-P AT1G21760.1 12169662
AT1G75950.1 Bra017949.1-P AT1G21760.1 12795696
AT1G75950.1 Bra030346.1-P AT1G23780.1 12795696
AT1G75950.1 Bra010985.1-P AT1G25280.1 12795696
AT1G75950.1 Bra012486.1-P AT1G25280.1 12795696
AT1G75950.1 Bra024763.1-P AT1G25280.1 12795696
AT1G75950.1 Bra030038.1-P AT1G27340.1 12795696
AT1G75950.1 Bra032820.1-P AT1G27340.1 12795696
AT1G75950.1 Bra039878.1-P AT1G30950.1 12169662
AT1G75950.1 Bra039878.1-P AT1G30950.1 12795696
AT1G75950.1 Bra039878.1-P AT1G30950.1 12826617
AT1G75950.1 Bra039878.1-P AT1G30950.1 15749712
AT1G75950.1 Bra038977.1-P AT1G55000.1 12169662
AT1G75950.1 Bra038977.1-P AT1G55000.1 21798944
AT1G75950.1 Bra027000.1-P AT1G63090.1 12795696
AT1G75950.1 Bra027618.1-P AT1G63090.1 12795696
AT1G75950.1 Bra004092.1-P AT1G67340.1 12169662
AT1G75950.1 Bra004220.1-P AT1G67340.1 12169662
AT1G75950.1 Bra034004.1-P AT1G67340.1 12169662
AT1G75950.1 Bra003700.1-P AT1G76920.1 12169662
AT1G75950.1 Bra003700.1-P AT1G76920.1 12795696
AT1G75950.1 Bra003700.1-P AT1G76920.1 21798944
AT1G75950.1 Bra008345.1-P AT1G78100.1 12169662
AT1G75950.1 Bra015630.1-P AT1G78100.1 12169662
AT1G75950.1 Bra035198.1-P AT1G80110.1 12795696
AT1G75950.1 Bra024867.1-P AT2G01620.1 12795696
AT1G75950.1 Bra024868.1-P AT2G01620.1 12795696
AT1G75950.1 Bra026645.1-P AT2G01620.1 12795696
AT1G75950.1 Bra024824.1-P AT2G02230.1 12795696
AT1G75950.1 Bra024825.1-P AT2G02230.1 12795696
AT1G75950.1 Bra024827.1-P AT2G02230.1 12795696
AT1G75950.1 Bra026609.1-P AT2G02230.1 12795696
AT1G75950.1 Bra017407.1-P AT2G02870.1 12795696
AT1G75950.1 Bra024801.1-P AT2G02870.1 12795696
AT1G75950.1 Bra026575.1-P AT2G02870.1 12795696
AT1G75950.1 Bra017407.1-P AT2G02870.1 21798944
AT1G75950.1 Bra024801.1-P AT2G02870.1 21798944
AT1G75950.1 Bra026575.1-P AT2G02870.1 21798944
AT1G75950.1 Bra013201.1-P AT2G04550.1 12795696
AT1G75950.1 Bra015154.1-P AT2G04550.1 12795696
AT1G75950.1 Bra013201.1-P AT2G04550.1 21798944
AT1G75950.1 Bra015154.1-P AT2G04550.1 21798944
AT1G75950.1 Bra030269.1-P AT2G21950.1 12795696
AT1G75950.1 Bra007843.1-P AT2G24540.1 12795696
AT1G75950.1 Bra007843.1-P AT2G24540.1 14653999
AT1G75950.1 Bra034254.1-P AT2G25490.1 12169662
AT1G75950.1 Bra034254.1-P AT2G25490.1 14675533
AT1G75950.1 Bra034254.1-P AT2G25490.1 14749489
AT1G75950.1 Bra034254.1-P AT2G25490.1 21798944
AT1G75950.1 Bra000156.1-P AT2G39940.1 12172031
AT1G75950.1 Bra005000.1-P AT2G39940.1 12172031
AT1G75950.1 Bra017044.1-P AT2G39940.1 12172031
AT1G75950.1 Bra017045.1-P AT2G39940.1 12172031
AT1G75950.1 Bra000156.1-P AT2G39940.1 12445118
AT1G75950.1 Bra005000.1-P AT2G39940.1 12445118
AT1G75950.1 Bra017044.1-P AT2G39940.1 12445118
AT1G75950.1 Bra017045.1-P AT2G39940.1 12445118
AT1G75950.1 Bra000156.1-P AT2G39940.1 14749489
AT1G75950.1 Bra005000.1-P AT2G39940.1 14749489
AT1G75950.1 Bra017044.1-P AT2G39940.1 14749489
AT1G75950.1 Bra017045.1-P AT2G39940.1 14749489
AT1G75950.1 Bra000156.1-P AT2G39940.1 21798944
AT1G75950.1 Bra005000.1-P AT2G39940.1 21798944
AT1G75950.1 Bra017044.1-P AT2G39940.1 21798944
AT1G75950.1 Bra017045.1-P AT2G39940.1 21798944
AT1G75950.1 Bra020754.1-P AT3G06380.1 15064372
AT1G75950.1 Bra001900.1-P AT3G23050.1 15208392
AT1G75950.1 Bra033886.1-P AT3G23050.1 15208392
AT1G75950.1 Bra017339.1-P AT3G26000.1 12795696
AT1G75950.1 Bra025177.1-P AT3G26000.1 12795696
AT1G75950.1 Bra036353.1-P AT3G26000.1 12795696
AT1G75950.1 Bra007494.1-P AT3G59940.1 12795696
AT1G75950.1 Bra003518.1-P AT3G62980.1 10398681
AT1G75950.1 Bra007720.1-P AT3G62980.1 10398681
AT1G75950.1 Bra014378.1-P AT3G62980.1 10398681
AT1G75950.1 Bra003518.1-P AT3G62980.1 12795696
AT1G75950.1 Bra007720.1-P AT3G62980.1 12795696
AT1G75950.1 Bra014378.1-P AT3G62980.1 12795696
AT1G75950.1 Bra036266.1-P AT4G02440.1 12795696
AT1G75950.1 Bra036266.1-P AT4G02440.1 16412087
AT1G75950.1 Bra036266.1-P AT4G02440.1 21798944
AT1G75950.1 Bra000874.1-P AT4G02570.1 15659098
AT1G75950.1 Bra036257.1-P AT4G02570.1 15659098
AT1G75950.1 Bra000874.1-P AT4G02570.1 15749712
AT1G75950.1 Bra036257.1-P AT4G02570.1 15749712
AT1G75950.1 Bra000874.1-P AT4G02570.1 16412087
AT1G75950.1 Bra036257.1-P AT4G02570.1 16412087
AT1G75950.1 Bra000842.1-P AT4G03190.1 12008900
AT1G75950.1 Bra034191.1-P AT4G03190.1 12008900
AT1G75950.1 Bra000842.1-P AT4G03190.1 21798944
AT1G75950.1 Bra034191.1-P AT4G03190.1 21798944
AT1G75950.1 Bra030690.1-P AT4G05460.1 12795696
AT1G75950.1 Bra031582.1-P AT4G05460.1 12795696
AT1G75950.1 Bra000729.1-P AT4G10930.1 12795696
AT1G75950.1 Bra013532.1-P AT4G21510.1 12795696
AT1G75950.1 Bra013776.1-P AT4G24210.1 15161962
AT1G75950.1 Bra033585.1-P AT4G38940.1 12169662
AT1G75950.1 Bra009835.1-P AT5G25350.1 14675533
AT1G75950.1 Bra036542.1-P AT5G25350.1 14675533
AT1G75950.1 Bra025080.1-P AT5G45360.1 12795696
AT1G75950.1 Bra027603.1-P AT5G45360.1 12795696
AT1G75950.1 Bra020714.1-P AT5G48170.1 15161962
AT1G75950.1 Bra036183.1-P AT5G48170.1 15161962
AT1G75950.1 Bra037508.1-P AT5G48170.1 15161962
AT1G75950.1 Bra020625.1-P AT5G49610.1 14749489
AT1G75950.1 Bra029137.1-P AT5G52120.1 12795696
AT1G75950.1 Bra002686.1-P AT5G57900.1 12795696
AT1G75950.1 Bra024392.1-P AT5G65495.1 12795696
AT1G75950.1 Bra037120.1-P AT5G67250.1 12169662
AT1G75950.1 Bra037120.1-P AT5G67250.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68112 Canola cytosol 94.38 100.0
CDX85931 Canola cytosol 94.38 100.0
Bra008231.1-P Field mustard cytosol 96.88 96.88
AT1G75950.1 Thale cress cytosol 93.12 93.12
Bra015801.1-P Field mustard cytosol 90.62 90.06
Bra018756.1-P Field mustard cytosol 70.62 72.44
Bra025795.1-P Field mustard cytosol 72.5 72.05
Bra018757.1-P Field mustard cytosol 68.12 68.12
Bra014519.1-P Field mustard cytosol 62.5 62.89
Bra014159.1-P Field mustard cytosol 61.88 62.26
Bra012214.1-P Field mustard cytosol 50.62 60.45
Bra012216.1-P Field mustard cytosol 58.75 58.75
Bra012213.1-P Field mustard cytosol 52.5 55.26
Bra039504.1-P Field mustard cytosol 57.5 54.44
Bra017397.1-P Field mustard cytosol 51.88 52.2
Protein Annotations
MapMan:19.2.2.8.1.1Gene3D:3.30.710.10EnsemblPlantsGene:Bra003735EnsemblPlants:Bra003735.1EnsemblPlants:Bra003735.1-PGO:GO:0006511
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0019538UniProt:M4CHQ2
PFAM:PF01466PFAM:PF03931PIRSF:PIRSF028729PANTHER:PTHR11165PANTHER:PTHR11165:SF89InterPro:SKP1
InterPro:SKP1-likeInterPro:SKP1-like_dim_sfInterPro:SKP1/BTB/POZ_sfSMART:SM00512SUPFAM:SSF54695SUPFAM:SSF81382
InterPro:Skp1_comp_POZInterPro:Skp1_comp_dimerUniParc:UPI0000001D63SEG:seg::
Description
AT1G75950 (E=9e-077) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase
Coordinates
chrA07:-:14765063..14765915
Molecular Weight (calculated)
17791.8 Da
IEP (calculated)
4.155
GRAVY (calculated)
-0.378
Length
160 amino acids
Sequence
(BLAST)
001: MSTKKIVLKS SDGESFEVDE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK KHVDAAASKS EAVDGGGSSD DDLKAWDAEF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFSPEEEEE VRRENQWAFE
Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.