Factsheet for Bra034254.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000528.1-P
Bra000874.1-P
Bra001802.1-P
Bra003735.1-P
Bra008231.1-P
Bra014159.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra023927.1-P
Bra035746.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Bra039504.1-P	AT1G10230.1	12169662
AT2G25490.1	Bra003735.1-P	AT1G75950.1	12169662
AT2G25490.1	Bra008231.1-P	AT1G75950.1	12169662
AT2G25490.1	Bra015801.1-P	AT1G75950.1	12169662
AT2G25490.1	Bra003735.1-P	AT1G75950.1	14675533
AT2G25490.1	Bra008231.1-P	AT1G75950.1	14675533
AT2G25490.1	Bra015801.1-P	AT1G75950.1	14675533
AT2G25490.1	Bra003735.1-P	AT1G75950.1	14749489
AT2G25490.1	Bra008231.1-P	AT1G75950.1	14749489
AT2G25490.1	Bra015801.1-P	AT1G75950.1	14749489
AT2G25490.1	Bra000528.1-P	AT2G27050.1	14675533
AT2G25490.1	Bra001802.1-P	AT3G20770.1	14675532
AT2G25490.1	Bra023927.1-P	AT3G20770.1	14675532
AT2G25490.1	Bra035746.1-P	AT3G20770.1	14675532
AT2G25490.1	Bra001802.1-P	AT3G20770.1	14675533
AT2G25490.1	Bra023927.1-P	AT3G20770.1	14675533
AT2G25490.1	Bra035746.1-P	AT3G20770.1	14675533
AT2G25490.1	Bra014159.1-P	AT3G60010.1	12169662
AT2G25490.1	Bra018756.1-P	AT3G60010.1	12169662
AT2G25490.1	Bra018757.1-P	AT3G60010.1	12169662
AT2G25490.1	Bra000874.1-P	AT4G02570.1	14675533
AT2G25490.1	Bra036257.1-P	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35358	Canola	cytosol	98.55	98.39
AT2G25490.1	Thale cress	plastid	85.53	84.71
KRH15886	Soybean	cytosol	61.09	59.01
Bra036542.1-P	Field mustard	cytosol	58.04	58.6
KRH05167	Soybean	cytosol	56.27	57.38
Bra009835.1-P	Field mustard	cytosol	57.07	57.07
VIT_04s0008g05470.t01	Wine grape	cytosol	59.32	55.32
KRH61771	Soybean	cytosol	55.79	54.56
KRH52439	Soybean	cytosol, nucleus, peroxisome	55.95	54.55
PGSC0003DMT400040977	Potato	nucleus	57.4	53.36
Solyc08g060810.2.1	Tomato	plastid	56.59	52.93
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	20.74	48.5
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.55	46.18
GSMUA_Achr4P30680_001	Banana	cytosol	47.91	45.71
PGSC0003DMT400042949	Potato	cytosol	40.51	45.65
GSMUA_Achr6P05220_001	Banana	cytosol	47.75	45.41
HORVU7Hr1G090240.1	Barley	cytosol	39.23	45.27
Zm00001d015778_P001	Maize	cytosol	46.46	44.95
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	48.23	44.91
Solyc06g049010.1.1	Tomato	plastid	44.53	44.68
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	46.78	44.43
Zm00001d053642_P001	Maize	cytosol	46.14	44.09
PGSC0003DMT400089433	Potato	mitochondrion	32.48	44.01
HORVU6Hr1G038430.3	Barley	plastid	45.98	43.8
EER90022	Sorghum	cytosol, plastid	43.89	43.61
TraesCS6B01G210700.1	Wheat	cytosol	45.5	43.61
TraesCS6A01G181900.1	Wheat	cytosol	45.18	43.3
TraesCS6D01G169200.1	Wheat	cytosol	45.18	43.3
TraesCS7D01G373800.1	Wheat	cytosol	45.18	43.16
TraesCS7B01G278800.1	Wheat	cytosol	44.86	43.12
TraesCS7A01G377500.1	Wheat	cytosol	44.53	42.68
Os02t0200900-01	Rice	cytosol	45.18	42.58
PGSC0003DMT400094835	Potato	cytosol	16.72	42.45
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	45.34	42.22
Os06t0605900-01	Rice	cytosol	41.32	40.99
HORVU5Hr1G029670.1	Barley	mitochondrion	31.19	37.82
Solyc06g030610.1.1	Tomato	cytosol	16.4	37.23
HORVU5Hr1G000950.4	Barley	plastid	26.69	37.14
Zm00001d036880_P003	Maize	cytosol	43.73	36.96
Solyc06g030620.1.1	Tomato	cytosol	11.9	36.82
Zm00001d000408_P001	Maize	cytosol	43.89	36.74
Bra009671.1-P	Field mustard	cytosol	16.4	25.19
Bra012785.1-P	Field mustard	cytosol	23.95	23.73
Bra029367.1-P	Field mustard	cytosol	15.59	23.6
Bra003692.1-P	Field mustard	cytosol	13.5	23.4
Bra015699.1-P	Field mustard	cytosol	12.86	22.6
Bra016422.1-P	Field mustard	cytosol	12.7	22.38
Bra032213.1-P	Field mustard	plastid	18.17	21.98
Bra007401.1-P	Field mustard	cytosol	8.68	21.95
Bra005669.1-P	Field mustard	cytosol	23.15	21.56
Bra029656.1-P	Field mustard	cytosol	13.67	21.52
Bra029994.1-P	Field mustard	cytosol	17.36	21.14
Bra036607.1-P	Field mustard	cytosol	21.54	20.97
Bra009931.1-P	Field mustard	cytosol	21.22	20.62
Bra037120.1-P	Field mustard	cytosol	17.36	20.53

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra034254	EnsemblPlants:Bra034254.1
EnsemblPlants:Bra034254.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009719
GO:GO:0009723	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4EZL1	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002544EFA	SEG:seg

Description

AT2G25490 (E=5e-294) EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA04:-:11424166..11426243

Molecular Weight (calculated)

65957.1 Da

IEP (calculated)

7.281

GRAVY (calculated)

0.187

Length

622 amino acids

Sequence
(BLAST)

001: MSQIYSFAGE SEFYRRGSNP KEANIFLSLV DCYYPPCKRS RVVAAAPSLF SAFEEEEKPV SIDLLPDECL FEIFRRLPGP QERTACAFVS KHWLTLVTSI
101: RQSELDVDNK TEDDCEGCLS RSLDGKKKAT DVRLAAVAVG TAGRGGLGKL SVRGSDKVSD LGLRSIGRSC PSLGSLSLCN LSAVTDIGLL EIAEGCPQLE
201: KLDLSRCPAI TDKGLVAIAK SCPNLSELSL EACLRIGDEG LQAVARSCSK LRSVSIKNCP LVRDQGVAAL LSNTTCSLTK LKLQMLNVTD VSLAVVGHYG
301: LSVTELVLAG LSHVTEKGFW VMGNGIGLQK LNSLTITACQ GVTDTGLESV GKGCPNMKKA LISKSPLLSD NGLVSFAKGS LSLESIQLEE CHRVTQFGFF
401: GSLLNCGAKL KAFSMVNCLG IRDLATGLPA SSHCSGLRSL SVRNCPGFGD ANLAALGKLC PQLEDIELCG LKGITESGFL HLLQNSLVKV NFSGCSGLTD
501: RVVSAISARN GLTLEVLNMD GCSKISDASL VSIAANCQIL SDLDLSKCSV SDFGIQALAS SDKLKLQILS MAGCAMVTDK SLPSIVKLGS TLLGLNLQQC
601: RSVSCSTVDF LVERLYKCDI LS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.