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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
MultiLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G050990.2
HORVU3Hr1G098530.4
HORVU4Hr1G051680.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25490.1 HORVU4Hr1G051680.1 AT2G27050.1 14675533
AT2G25490.1 HORVU4Hr1G051680.1 AT3G20770.1 14675532
AT2G25490.1 HORVU4Hr1G051680.1 AT3G20770.1 14675533
AT2G25490.1 HORVU3Hr1G050990.2 AT3G28715.1 21798944
AT2G25490.1 HORVU3Hr1G098530.4 AT4G02570.1 14675533
AT5G25350.1 HORVU4Hr1G051680.1 AT3G20770.1 14675532
AT5G25350.1 HORVU4Hr1G051680.1 AT3G20770.1 14675533
AT5G25350.1 HORVU3Hr1G098530.4 AT4G02570.1 14675533
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G089690.1 Barley cytosol, extracellular, mitochondrion 44.34 89.85
TraesCS7B01G278800.1 Wheat cytosol 96.47 80.37
TraesCS7D01G373800.1 Wheat cytosol 96.85 80.18
TraesCS7A01G377500.1 Wheat cytosol 95.73 79.51
HORVU5Hr1G029670.1 Barley mitochondrion 66.05 69.4
EER90022 Sorghum cytosol, plastid 80.33 69.17
HORVU5Hr1G000950.4 Barley plastid 57.33 69.13
Os06t0605900-01 Rice cytosol 77.92 66.99
HORVU6Hr1G038430.3 Barley plastid 72.54 59.88
Zm00001d036880_P003 Maize cytosol 79.04 57.88
Zm00001d000408_P001 Maize cytosol 78.85 57.2
GSMUA_Achr6P05220_001 Banana cytosol 56.22 46.33
GSMUA_Achr9P28510_001 Banana cytosol, nucleus, peroxisome 53.8 44.34
GSMUA_Achr4P30680_001 Banana cytosol 53.62 44.33
KRH04870 Soybean cytosol 22.26 44.12
KRH03688 Soybean cytosol 52.13 43.98
GSMUA_Achr10P... Banana extracellular, plasma membrane, plastid 54.17 43.71
KRH20255 Soybean cytosol 51.58 43.51
PGSC0003DMT400007545 Potato cytosol 50.46 42.7
Solyc12g009560.1.1 Tomato cytosol 49.91 42.23
PGSC0003DMT400079445 Potato cytosol, nucleus, peroxisome 50.09 42.06
VIT_11s0016g05410.t01 Wine grape cytosol 51.39 41.78
Solyc07g008250.2.1 Tomato cytosol, nucleus, peroxisome 49.54 41.65
KRH62989 Soybean cytosol 50.09 41.54
VIT_04s0008g05470.t01 Wine grape cytosol 50.65 40.93
Bra036542.1-P Field mustard cytosol 46.38 40.58
GSMUA_Achr2P15920_001 Banana cytosol, peroxisome, plastid 50.28 40.57
KRH15886 Soybean cytosol 48.24 40.37
Solyc08g060810.2.1 Tomato plastid 49.72 40.3
PGSC0003DMT400040977 Potato nucleus 49.72 40.06
AT2G25490.1 Thale cress plastid 46.38 39.81
CDX87090 Canola cytosol 45.45 39.77
KRH05167 Soybean cytosol 44.9 39.67
KRH52439 Soybean cytosol, nucleus, peroxisome 46.94 39.66
CDY19807 Canola cytosol 45.27 39.61
PGSC0003DMT400094835 Potato cytosol 18.0 39.59
CDY35358 Canola cytosol 45.45 39.33
KRH61771 Soybean cytosol 46.38 39.31
Bra034254.1-P Field mustard cytosol 45.27 39.23
AT5G25350.1 Thale cress cytosol 45.08 39.0
CDX76980 Canola cytosol 42.86 38.56
CDX80503 Canola cytosol 44.34 38.49
CDX88173 Canola cytosol 44.34 38.42
Bra009835.1-P Field mustard cytosol 43.97 38.1
PGSC0003DMT400042949 Potato cytosol 37.48 36.59
Solyc06g030620.1.1 Tomato cytosol 13.36 35.82
Solyc06g030610.1.1 Tomato cytosol 18.0 35.4
PGSC0003DMT400089433 Potato mitochondrion 29.31 34.42
Solyc06g049010.1.1 Tomato plastid 38.96 33.87
HORVU3Hr1G012530.12 Barley cytosol 14.29 21.94
HORVU6Hr1G059950.1 Barley cytosol 15.96 20.62
HORVU1Hr1G065030.2 Barley cytosol 13.17 18.73
HORVU0Hr1G005070.1 Barley plastid 18.92 18.28
HORVU4Hr1G014630.1 Barley cytosol 12.8 17.88
HORVU5Hr1G047420.2 Barley cytosol, mitochondrion, plastid 21.52 17.19
HORVU3Hr1G091200.4 Barley cytosol 12.99 16.67
HORVU5Hr1G050420.1 Barley plastid 16.88 16.49
HORVU5Hr1G024060.1 Barley cytosol, plastid 24.86 15.9
Protein Annotations
EnsemblPlants:HORVU7Hr1G090240.1EnsemblPlantsGene:HORVU7Hr1G090240Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_Cys-con_subtypPANTHER:PTHR44327
PANTHER:PTHR44327:SF3PFAM:PF13516SEG:segSMART:SM00367SUPFAM:SSF52047MapMan:11.5.2.6
MapMan:19.2.2.8.1.4.2:::::
Description
No Description!
Coordinates
chrchr7H:-:548933250..548935805
Molecular Weight (calculated)
56079.0 Da
IEP (calculated)
5.084
GRAVY (calculated)
0.337
Length
539 amino acids
Sequence
(BLAST)
001: XAPAVPDLNQ VFVCEDEDQD GAEAASARPG RSERTLEGEA ATDVALTAAA VADGLRGSLE SVLVRGSHPT RGVTDSGISA VARGCPSLRS LALWDVPLVT
101: DAGLAEIAAG CPSLEKLDIT GCPLVTDKGL VAVAQGCPDL KTLTIESCSG VANEGLKAVG RCCSKLQAVN IKNCAYVGDQ GVSGLICSAT ASLAKVCLQG
201: LSITDASLAV IGYYGKAITN LTLTRLSSVG ERGFWVMANA LGLQKLRCMS ITSCPGVTEL ALVSIAKFCP SLKQLYLRKC SQISDGLLKD FAEAAKVLEN
301: LQIEECNRVT LTGILSFLLN CSPKFKALSL VKCTGIKDIC SAPAQLPVCK SLRSLTIKQC PGFTDSSLAV VGMICPHLEN LDLSGLGAVT DDGLLPLIRS
401: SESGLVHVDL NGCENLTDAA ISALVKAHGT SLAHLSLEGC SKITDASLFA ISESCSELAE LDLSNCMVSD YGVAVLASAE RLKLRVLSLS GCLKVTPKSV
501: PFLGSMPASL EGLNLQFNFI GNHNIASLEK QLWWCDILA
Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
Arabidopsis Description
EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.