CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89856
KRG96405
KRH01133
KRH14682
KRH18695
KRH18696
KRH40128
KRH68142
KRH73465

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	KRG89856	AT2G27050.1	14675533
AT2G25490.1	KRH14682	AT2G27050.1	14675533
AT2G25490.1	KRH18695	AT2G27050.1	14675533
AT2G25490.1	KRH18696	AT2G27050.1	14675533
AT2G25490.1	KRH73465	AT2G27050.1	14675533
AT2G25490.1	KRG89856	AT3G20770.1	14675532
AT2G25490.1	KRH14682	AT3G20770.1	14675532
AT2G25490.1	KRH18695	AT3G20770.1	14675532
AT2G25490.1	KRH18696	AT3G20770.1	14675532
AT2G25490.1	KRH73465	AT3G20770.1	14675532
AT2G25490.1	KRG89856	AT3G20770.1	14675533
AT2G25490.1	KRH14682	AT3G20770.1	14675533
AT2G25490.1	KRH18695	AT3G20770.1	14675533
AT2G25490.1	KRH18696	AT3G20770.1	14675533
AT2G25490.1	KRH73465	AT3G20770.1	14675533
AT2G25490.1	KRH01133	AT3G28715.1	21798944
AT2G25490.1	KRH40128	AT3G28715.1	21798944
AT2G25490.1	KRG96405	AT4G02570.1	14675533
AT2G25490.1	KRH68142	AT4G02570.1	14675533
AT5G25350.1	KRG89856	AT3G20770.1	14675532
AT5G25350.1	KRH14682	AT3G20770.1	14675532
AT5G25350.1	KRH18695	AT3G20770.1	14675532
AT5G25350.1	KRH18696	AT3G20770.1	14675532
AT5G25350.1	KRH73465	AT3G20770.1	14675532
AT5G25350.1	KRG89856	AT3G20770.1	14675533
AT5G25350.1	KRH14682	AT3G20770.1	14675533
AT5G25350.1	KRH18695	AT3G20770.1	14675533
AT5G25350.1	KRH18696	AT3G20770.1	14675533
AT5G25350.1	KRH73465	AT3G20770.1	14675533
AT5G25350.1	KRG96405	AT4G02570.1	14675533
AT5G25350.1	KRH68142	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61771	Soybean	cytosol	94.04	94.34
KRH15886	Soybean	cytosol	72.1	71.43
KRH05167	Soybean	cytosol	66.93	70.0
VIT_04s0008g05470.t01	Wine grape	cytosol	65.05	62.22
PGSC0003DMT400040977	Potato	nucleus	60.5	57.7
KRH03688	Soybean	cytosol	57.37	57.28
AT2G25490.1	Thale cress	plastid	56.27	57.17
KRH20255	Soybean	cytosol	57.21	57.12
Solyc08g060810.2.1	Tomato	plastid	58.93	56.54
Bra034254.1-P	Field mustard	cytosol	54.55	55.95
AT5G25350.1	Thale cress	cytosol	54.39	55.7
CDX87090	Canola	cytosol	53.76	55.68
Bra036542.1-P	Field mustard	cytosol	53.76	55.68
CDX76980	Canola	cytosol	52.19	55.59
CDY35358	Canola	cytosol	54.08	55.38
CDY19807	Canola	cytosol	53.45	55.36
KRH62989	Soybean	cytosol	56.11	55.08
CDX88173	Canola	cytosol	52.82	54.18
Bra009835.1-P	Field mustard	cytosol	52.35	53.7
CDX80503	Canola	cytosol	52.19	53.62
GSMUA_Achr4P30680_001	Banana	cytosol	52.19	51.07
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	52.04	50.76
GSMUA_Achr6P05220_001	Banana	cytosol	51.88	50.61
PGSC0003DMT400089433	Potato	mitochondrion	36.21	50.33
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	52.04	49.7
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	50.78	48.5
PGSC0003DMT400094835	Potato	cytosol	18.5	48.16
PGSC0003DMT400042949	Potato	cytosol	41.54	48.01
Solyc06g049010.1.1	Tomato	plastid	45.77	47.1
HORVU7Hr1G090240.1	Barley	cytosol	39.66	46.94
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	19.44	46.62
EER90022	Sorghum	cytosol, plastid	44.36	45.21
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	46.4	45.19
Zm00001d053642_P001	Maize	cytosol	46.08	45.16
TraesCS6D01G169200.1	Wheat	cytosol	45.92	45.15
TraesCS6B01G210700.1	Wheat	cytosol	45.92	45.15
Zm00001d015778_P001	Maize	cytosol	45.45	45.1
KRH04870	Soybean	cytosol	19.12	44.85
TraesCS6A01G181900.1	Wheat	cytosol	45.61	44.84
Os02t0200900-01	Rice	cytosol	46.08	44.55
Solyc06g030610.1.1	Tomato	cytosol	19.12	44.53
TraesCS7B01G278800.1	Wheat	cytosol	45.14	44.51
HORVU6Hr1G038430.3	Barley	plastid	45.45	44.41
TraesCS7D01G373800.1	Wheat	cytosol	45.3	44.39
TraesCS7A01G377500.1	Wheat	cytosol	44.67	43.91
Os06t0605900-01	Rice	cytosol	43.1	43.86
Solyc06g030620.1.1	Tomato	cytosol	13.79	43.78
HORVU5Hr1G000950.4	Barley	plastid	26.49	37.81
Zm00001d036880_P003	Maize	cytosol	43.57	37.77
HORVU5Hr1G029670.1	Barley	mitochondrion	30.25	37.62
Zm00001d000408_P001	Maize	cytosol	42.79	36.74
KRH36149	Soybean	cytosol	15.99	24.34
KRH64574	Soybean	cytosol	12.23	24.3
KRH15905	Soybean	cytosol	14.11	24.26
KRH50979	Soybean	cytosol	13.32	24.22
KRH18090	Soybean	cytosol	13.79	23.47
KRG90608	Soybean	cytosol	15.36	23.45
KRH53355	Soybean	cytosol	13.64	23.39
KRH11333	Soybean	cytosol	14.26	23.27
KRH20947	Soybean	cytosol, nucleus, peroxisome	22.1	23.23
KRH38032	Soybean	cytosol	13.64	23.02
KRH02152	Soybean	cytosol	21.0	22.95
KRH15408	Soybean	plastid	19.44	22.59
KRH16153	Soybean	cytosol	8.62	22.18
KRH47976	Soybean	cytosol	13.48	22.16
KRH04530	Soybean	cytosol	18.5	21.89
KRH52037	Soybean	cytosol	13.79	21.78
KRH57971	Soybean	cytosol	18.65	21.29
KRG96764	Soybean	cytosol	21.32	21.22
KRH05631	Soybean	plastid	18.65	21.14
KRH68483	Soybean	cytosol	21.0	20.9
KRH72766	Soybean	cytosol	17.08	20.26
KRH28425	Soybean	cytosol	16.46	19.96
KRH77049	Soybean	cytosol	16.3	19.92
KRH17127	Soybean	cytosol	20.06	19.63
KRH76059	Soybean	cytosol, nucleus, peroxisome	20.53	19.52
KRH65525	Soybean	cytosol, peroxisome, plastid	20.69	18.64
KRH61346	Soybean	cytosol	12.85	11.75

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EMBL:ACUP02003419	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_06G068400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K8U8	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH52439	ProteinID:KRH52439	ProteinID:KRH52439.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00023C3558	:

Description

hypothetical protein

Coordinates

chr6:-:5239236..5242914

Molecular Weight (calculated)

67907.7 Da

IEP (calculated)

7.800

GRAVY (calculated)

0.159

Length

638 amino acids

Sequence
(BLAST)

001: MSKVFSFTGN DDFYHGGPIY PNPKEPCLFL SLGRQVDVYL PLQKRSRFSV PFDISGEWFE QKQKPKTSIE SLPDECLFEI LRRLPAGQDR SVCASVSKRW
101: LMLLSSICKT EIHSYGSTGN ENQEISDEGY LSRSLEGKKA TDVRLAAIAV GTASRGGLGK LTIRGCNSDR GVTNVGLKAI AHGCPSLKVC SLWDVATVGD
201: VGLIEIASGC HQLEKLDLCK CPNISDKTLI AVAKNCPNLA ELSIESCPNI GNEGLQAIGK CPNLRSISIK NCSGVGDQGV AGLLSSASFA LTKVKLESLT
301: VSDLSLAVIG HYGVAVTDLV LSCLPNVSEK GFWVMGNGHG LQKLTSITIN CCQGVTDVGL EAIGRGCPNV QNLKLRKSAF LSDKGLVSFA RAAPSVESLQ
401: LQECHRITQI GLFGVFFNCG AKLKVLTLIS CYGIKDLNMD LPAISPSESI WSLTIHDCPG FGNANLALLG KLCPRLQHVE LSGLQGVTDA GFLPLLESSE
501: AGLVKVNLNG CVNLSDRVVL SMVNSHGWTL EVLSLDGCKR VGDASLMAIA GSCPLLADLD VSRCAITDTG IAALARGKQI NLEVLSLAGC ALVSDKSVPA
601: LKKMGCSLAG LNIKRCKGIS SRSVNKLQEH LCMCDILY

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.