Factsheet for Solyc06g030620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009170.2.1
Solyc01g099290.2.1
Solyc06g073720.1.1
Solyc06g073730.1.1
Solyc10g081530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Solyc01g009170.2.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT2G25490.1	Solyc01g099290.2.1	AT4G02570.1	14675533
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc01g099290.2.1	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094835	Potato	cytosol	52.74	43.27
Solyc06g030610.1.1	Tomato	cytosol	47.26	34.67
PGSC0003DMT400089433	Potato	mitochondrion	58.71	25.71
Solyc06g049010.1.1	Tomato	plastid	50.75	16.45
KRH05167	Soybean	cytosol	46.27	15.25
HORVU5Hr1G000950.4	Barley	plastid	32.34	14.54
Solyc08g060810.2.1	Tomato	plastid	46.77	14.14
KRH15886	Soybean	cytosol	44.78	13.98
KRH61771	Soybean	cytosol	43.78	13.84
KRH52439	Soybean	cytosol, nucleus, peroxisome	43.78	13.79
HORVU7Hr1G090240.1	Barley	cytosol	35.82	13.36
VIT_04s0008g05470.t01	Wine grape	cytosol	44.28	13.34
AT2G25490.1	Thale cress	plastid	41.29	13.22
Solyc12g009560.1.1	Tomato	cytosol	41.79	13.19
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	17.41	13.16
CDX87090	Canola	cytosol	40.3	13.15
CDX76980	Canola	cytosol	38.81	13.02
CDY19807	Canola	cytosol	39.8	12.99
Bra036542.1-P	Field mustard	cytosol	39.8	12.99
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	41.29	12.95
HORVU5Hr1G029670.1	Barley	mitochondrion	32.84	12.87
AT5G25350.1	Thale cress	cytosol	38.81	12.52
GSMUA_Achr4P30680_001	Banana	cytosol	40.3	12.42
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	40.3	12.39
GSMUA_Achr6P05220_001	Banana	cytosol	40.3	12.39
CDX88173	Canola	cytosol	38.31	12.38
Bra009835.1-P	Field mustard	cytosol	38.31	12.38
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	40.8	12.28
CDY35358	Canola	cytosol	37.81	12.2
TraesCS7B01G278800.1	Wheat	cytosol	38.81	12.06
TraesCS6D01G169200.1	Wheat	cytosol	38.81	12.02
TraesCS7D01G373800.1	Wheat	cytosol	38.81	11.98
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	38.81	11.91
Bra034254.1-P	Field mustard	cytosol	36.82	11.9
TraesCS7A01G377500.1	Wheat	cytosol	38.31	11.86
TraesCS6B01G210700.1	Wheat	cytosol	38.31	11.86
TraesCS6A01G181900.1	Wheat	cytosol	38.31	11.86
Zm00001d053642_P001	Maize	cytosol	38.31	11.83
Zm00001d015778_P001	Maize	cytosol	37.81	11.82
HORVU6Hr1G038430.3	Barley	plastid	38.31	11.79
CDX80503	Canola	cytosol	36.32	11.76
EER90022	Sorghum	cytosol, plastid	36.32	11.66
Os02t0200900-01	Rice	cytosol	37.31	11.36
Zm00001d036880_P003	Maize	cytosol	35.82	9.78
Zm00001d000408_P001	Maize	cytosol	35.82	9.69
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	31.84	9.58
Os06t0605900-01	Rice	cytosol	29.35	9.41
Solyc04g063380.2.1	Tomato	cytosol	16.92	9.34
Solyc06g007680.1.1	Tomato	cytosol	18.41	9.25
Solyc04g008980.2.1	Tomato	cytosol	17.91	8.57
Solyc01g099970.2.1	Tomato	extracellular	23.38	7.59
Solyc10g076290.1.1	Tomato	cytosol	23.38	6.96
Solyc06g054440.2.1	Tomato	mitochondrion	17.91	6.73
Solyc06g005380.2.1	Tomato	cytosol	11.44	6.65
Solyc02g092990.1.1	Tomato	plastid	14.93	5.45
Solyc03g044220.1.1	Tomato	cytosol	14.43	5.28
Solyc04g078490.1.1	Tomato	cytosol	13.93	5.24

Protein Annotations

EnsemblPlants:Solyc06g030620.1.1	EnsemblPlantsGene:Solyc06g030620.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44327
PANTHER:PTHR44327:SF1	SUPFAM:SSF52047	UniParc:UPI0002765939	UniProt:K4C4I5	MapMan:19.2.2.8.1.4.2	:

Description

No Description!

Coordinates

chr6:+:20117465..20118204

Molecular Weight (calculated)

22098.0 Da

IEP (calculated)

4.409

GRAVY (calculated)

0.397

Length

201 amino acids

Sequence
(BLAST)

001: MLLRNILMDE IAECNCIESE GYLVRSIFGR DAKDVKLAAI TIETPNHGEL ENLYIQGNNP CRGVIDAGLA TIAPGFPTLI DLSLSIVSFI VGKGLSEIVY
101: GLHILEKLDI FQCQIITDKY LLDFSKNCPN MNSLTTDSCS NIWNYSLKFV ESNCSKKLET LTLVSCIGVE DFRLTLVDSG CSSLVSLAIA IVLERAILQL
201: I

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.