Factsheet for Solyc04g078490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008648	Potato	cytosol	25.66	82.04
VIT_18s0001g09940.t01	Wine grape	plastid	71.72	70.79
KRH15408	Soybean	plastid	69.48	67.58
PGSC0003DMT400091765	Potato	cytosol	88.76	67.14
KRH05631	Soybean	plastid	67.79	64.3
Bra032213.1-P	Field mustard	plastid	61.05	63.42
CDY43846	Canola	plastid	61.05	63.42
AT1G47056.1	Thale cress	cytosol, plastid	61.24	63.13
CDY25663	Canola	plastid	60.11	62.45
Solyc02g092990.1.1	Tomato	plastid	60.49	58.73
AT4G07400.1	Thale cress	nucleus	59.93	57.76
Solyc03g044220.1.1	Tomato	cytosol	58.99	57.38
GSMUA_Achr3P28280_001	Banana	plastid	52.81	57.2
GSMUA_Achr4P12920_001	Banana	plastid	51.5	53.82
GSMUA_Achr9P22570_001	Banana	plastid	43.45	52.73
GSMUA_Achr2P05250_001	Banana	cytosol	47.0	51.65
TraesCS5A01G161400.1	Wheat	cytosol, plastid	50.56	51.23
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	50.37	51.04
TraesCS5B01G158800.1	Wheat	plastid	50.37	51.04
OQU89081	Sorghum	cytosol	49.44	50.29
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	41.39	50.11
GSMUA_Achr9P11380_001	Banana	cytosol	41.95	50.0
Os04t0505700-01	Rice	cytosol, mitochondrion	38.76	49.88
GSMUA_Achr8P15580_001	Banana	cytosol	38.02	49.75
Zm00001d019677_P001	Maize	cytosol	48.31	49.14
KXG26667	Sorghum	plastid	42.7	48.72
HORVU5Hr1G050420.1	Barley	plastid	50.19	48.55
Zm00001d003103_P001	Maize	plastid	46.63	47.88
Zm00001d025812_P001	Maize	plastid	46.44	45.42
TraesCS2A01G359900.1	Wheat	cytosol	45.88	45.29
Zm00001d025808_P001	Maize	plastid	46.25	45.24
HORVU0Hr1G005070.1	Barley	plastid	45.32	43.37
GSMUA_Achr9P18840_001	Banana	plastid	48.88	35.75
Solyc04g008980.2.1	Tomato	cytosol	15.92	20.24
Solyc12g009560.1.1	Tomato	cytosol	23.41	19.62
Solyc06g005380.2.1	Tomato	cytosol	12.55	19.36
Solyc06g007680.1.1	Tomato	cytosol	14.42	19.25
Solyc08g060810.2.1	Tomato	plastid	23.6	18.95
Solyc06g054440.2.1	Tomato	mitochondrion	18.35	18.32
Solyc06g049010.1.1	Tomato	plastid	21.16	18.23
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	21.72	18.1
Solyc04g063380.2.1	Tomato	cytosol	12.17	17.86
Solyc01g099970.2.1	Tomato	extracellular	20.6	17.77
Solyc06g030610.1.1	Tomato	cytosol	8.61	16.79
Solyc10g076290.1.1	Tomato	cytosol	20.97	16.59
Zm00001d037295_P001	Maize	mitochondrion	6.55	14.34
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.81	13.96
Solyc06g030620.1.1	Tomato	cytosol	5.24	13.93
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.81	13.3

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4BUT4
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR44356
PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc04g078490.1	EnsemblPlants:Solyc04g078490.1.1
UniParc:UPI0002766A3D	SEG:seg	:	:	:	:

Description

Putative F-box/LRR-repeat protein 8 [Source:Projected from Arabidopsis thaliana (AT4G07400) UniProtKB/Swiss-Prot;Acc:Q9S9X4]

Coordinates

chr4:+:63225186..63226790

Molecular Weight (calculated)

57255.1 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.041

Length

534 amino acids

Sequence
(BLAST)

001: MGQSASTVAG AQNRIKSRSS PVISSMKEID DSDDVIDVFD VGEFDYSSNI PDECLACIFH FLSSGDRKSS SLVCRRWLRV EGQSRHRLSL NAQSELVAVV
101: PVIFSRFDSV TKLALKCDRR SASIGDEALV LISLRCRNLT RLKLRSCREL TDAGMESFAK NCKGLKKLSC GSCAFGAKGM NAVLNNCSAL EELSVKRLRG
201: ITDGAAAEPI GPGVAGGSLR VICLKELYNG QCFGPLIIGS KSLRTLKLFR CSGDWDKILE VIAEQVSELV EIHLERLQVS DTGLAAISKC SILEILHLVK
301: TPECTNNGLK AVAENCKLLR KLHIDGWKTN RISDDGLIAV AKHCPNLQEL VLIGVNPTCA SLEKLATNCL NLERLALCGS ETVGDPELSC IAAKCIALRK
401: LCIKSCPVSD QGMEALASGC PNLVKVKVKK CRLVTSGSAD WLRTTRGSVA VNLDTPEPEN PDASASDGGL PEVGNEIRQV AGQVRGVSIA SSSTGRSNSF
501: KARLGLATGR NLVACTFRRW SSFGGSSSSS SRNN

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.