Factsheet for GSMUA_Achr9P18840_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05250_001	Banana	cytosol	49.45	74.28
GSMUA_Achr3P28280_001	Banana	plastid	39.18	58.01
GSMUA_Achr4P12920_001	Banana	plastid	40.0	57.14
GSMUA_Achr9P22570_001	Banana	plastid	33.15	55.0
GSMUA_Achr8P15580_001	Banana	cytosol	30.55	54.66
GSMUA_Achr9P11380_001	Banana	cytosol	32.74	53.35
VIT_18s0001g09940.t01	Wine grape	plastid	37.26	50.28
KRH15408	Soybean	plastid	37.67	50.09
OQU89081	Sorghum	cytosol	35.89	49.9
PGSC0003DMT400008648	Potato	cytosol	11.23	49.1
Solyc04g078490.1.1	Tomato	cytosol	35.75	48.88
AT1G47056.1	Thale cress	cytosol, plastid	34.66	48.84
AT5G67250.1	Thale cress	cytosol	35.21	48.77
CDX81326	Canola	cytosol	34.93	48.66
CDY25663	Canola	plastid	34.25	48.64
Bra032213.1-P	Field mustard	plastid	34.25	48.64
CDY43846	Canola	plastid	34.11	48.44
CDY18646	Canola	cytosol	34.66	48.28
TraesCS5A01G161400.1	Wheat	cytosol, plastid	34.79	48.2
KRH05631	Soybean	plastid	37.12	48.13
Bra037120.1-P	Field mustard	cytosol	34.52	47.91
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	34.52	47.82
TraesCS5B01G158800.1	Wheat	plastid	34.52	47.82
Zm00001d019677_P001	Maize	cytosol	34.25	47.62
Solyc02g092990.1.1	Tomato	plastid	35.48	47.09
HORVU5Hr1G050420.1	Barley	plastid	35.34	46.74
PGSC0003DMT400064250	Potato	mitochondrion	35.21	46.73
VIT_07s0129g01110.t01	Wine grape	plastid	35.75	46.36
Bra029994.1-P	Field mustard	cytosol	32.33	46.18
CDX83114	Canola	cytosol	31.1	45.67
AT4G07400.1	Thale cress	nucleus	34.66	45.67
KRH28425	Soybean	cytosol	32.6	45.25
AT3G50080.1	Thale cress	cytosol	32.33	45.21
CDX68575	Canola	cytosol	31.64	45.21
KRH77049	Soybean	cytosol	31.92	44.64
PGSC0003DMT400053918	Potato	cytosol	33.42	44.44
Solyc03g044220.1.1	Tomato	cytosol	33.29	44.26
KRH57971	Soybean	cytosol	31.37	40.97
KRH04530	Soybean	cytosol	30.0	40.63
KRH52037	Soybean	cytosol	21.23	38.37
PGSC0003DMT400091765	Potato	cytosol	33.15	34.28
CDY01426	Canola	cytosol	37.81	25.48
CDY12824	Canola	nucleus	37.53	25.14
KRH61346	Soybean	cytosol	19.86	20.77
GSMUA_Achr2P17760_001	Banana	cytosol	9.18	18.93
GSMUA_Achr8P28940_001	Banana	cytosol	9.59	18.42
GSMUA_Achr10P...	Banana	cytosol	8.77	18.03
GSMUA_Achr5P19410_001	Banana	cytosol	10.41	17.88
GSMUA_Achr6P18620_001	Banana	cytosol	8.9	17.71
GSMUA_AchrUn_...	Banana	cytosol	8.36	16.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	15.75	16.11
GSMUA_Achr3P22880_001	Banana	cytosol	13.97	15.94
GSMUA_Achr7P22290_001	Banana	cytosol	15.62	15.92
GSMUA_Achr8P13910_001	Banana	mitochondrion	7.67	15.82
GSMUA_Achr4P30680_001	Banana	cytosol	13.84	15.49
GSMUA_Achr6P05220_001	Banana	cytosol	13.84	15.44
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	13.84	15.12
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	13.42	14.98
GSMUA_Achr6P20450_001	Banana	cytosol	13.29	14.7
GSMUA_Achr11P...	Banana	cytosol	13.01	14.48
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	12.74	13.92

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G18840_001	EnsemblPlants:GSMUA_Achr9P18840_001	EnsemblPlants:GSMUA_Achr9T18840_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0U1J1
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000295DC83	SEG:seg	:	:

Description

F-box protein At1g47056 [Source:GMGC_GENE;Acc:GSMUA_Achr9G18840_001]

Coordinates

chr9:+:16427305..16429999

Molecular Weight (calculated)

79065.0 Da

IEP (calculated)

9.811

GRAVY (calculated)

-0.073

Length

730 amino acids

Sequence
(BLAST)

001: MRCHSPLFWM FQYFPRRKLS SSSSSSHCIP NSTGNHRGCT RGKTWYSLVH HGKLKWPQSL VSTRTLPLTR HSLSLSLVFH GHITISVYKR NKSGLRRGLD
101: AFSPVSPDDI KLTRPPGFII TLPGPPPCMG QSASSRLTDS PPAVVGGIST ATDYTADLPD DCLALVFQSL GPGDRKRCSL VCRRWLAVEG RSRLRLALDA
201: RAALLDLRAC GALTDAGMAA VARYCSGLRK LSVGSCAFGA KGVDAVLRGC PLLEELSIKR LRGLHDPSAT AELVAGAASL RSVCLKGLYN AQCFAPLIAG
301: CPNLKTLKLI RCSGDWDPLL KNMAARVPGV VEIHLERLQV TDSGLAALSV CVDLEVLRLV KTPECTNAGL AAVADRCAHL RKVHIDGWRA NRIGDEGLQA
401: LARRCAGLQE LVLIGVNPTS RTLELMASNC RRLERLAFCG SDTFGDAEVA CIASKCAALK KLCIKGCPIS DQGMEALAAG CPKLVKVKVK RCSGVTPECA
501: DRLAASRNGK LAVNVEADEG SAAVQQAEGT VVFGEFGIAE DTGGAERPPL ASVDRASAAG PLSSKSRRTA RKKRAGFFAS RRNLVASALR RWSHGSSYSR
601: HSHRQLVLSN RNESRVSEET ALETVRQTNT LTMYASFIIK CWNPEISRNF FSFVELMGRQ RESSFPWCQH DTHNRCACER NTPLGMQGGG GWGAPSLIVV
701: SIRDRCFPCF ITLVGPWMLR TRISMLSLIG

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.