Factsheet for GSMUA_Achr6P20450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	76.52	76.98
TraesCS5A01G091800.2	Wheat	cytosol	61.21	61.12
TraesCS5B01G097800.2	Wheat	cytosol	60.91	60.82
Zm00001d023825_P001	Maize	cytosol	60.45	60.45
TraesCS5D01G103900.3	Wheat	cytosol	60.91	60.36
KXG29052	Sorghum	plastid	60.3	60.3
Zm00001d041635_P002	Maize	cytosol	60.45	60.18
KXG23663	Sorghum	cytosol	60.0	59.82
Zm00001d048695_P001	Maize	cytosol	58.03	59.1
Os12t0552700-01	Rice	cytosol, peroxisome	33.33	58.98
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	52.73	54.12
KRH68483	Soybean	cytosol	51.97	53.51
KRG96764	Soybean	cytosol	51.82	53.35
CDX80608	Canola	cytosol	49.39	50.94
CDX88253	Canola	cytosol	49.24	50.78
Bra009931.1-P	Field mustard	cytosol	49.09	50.62
CDY19741	Canola	cytosol	46.97	50.24
Bra036607.1-P	Field mustard	cytosol	48.64	50.23
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	48.79	50.16
CDY53337	Canola	cytosol	48.48	50.08
PGSC0003DMT400063732	Potato	cytosol	47.73	49.14
Solyc01g099970.2.1	Tomato	extracellular	46.06	49.11
HORVU5Hr1G024060.1	Barley	cytosol, plastid	61.21	47.92
GSMUA_Achr7P22290_001	Banana	cytosol	40.15	37.01
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	39.55	36.55
GSMUA_Achr8P13910_001	Banana	mitochondrion	14.24	26.55
GSMUA_Achr5P19410_001	Banana	cytosol	16.82	26.12
GSMUA_Achr8P28940_001	Banana	cytosol	14.55	25.26
GSMUA_Achr3P22880_001	Banana	cytosol	24.39	25.16
GSMUA_Achr10P...	Banana	cytosol	13.33	24.79
GSMUA_Achr2P17760_001	Banana	cytosol	12.88	24.01
GSMUA_Achr6P18620_001	Banana	cytosol	12.58	22.62
GSMUA_AchrUn_...	Banana	cytosol	12.27	22.01
GSMUA_Achr6P05220_001	Banana	cytosol	21.36	21.56
GSMUA_Achr8P15580_001	Banana	cytosol	13.18	21.32
GSMUA_Achr4P30680_001	Banana	cytosol	20.76	21.01
GSMUA_Achr9P11380_001	Banana	cytosol	13.94	20.54
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	20.3	20.49
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	20.15	19.91
GSMUA_Achr2P05250_001	Banana	cytosol	14.55	19.75
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	19.55	19.31
GSMUA_Achr3P28280_001	Banana	plastid	14.39	19.27
GSMUA_Achr4P12920_001	Banana	plastid	13.79	17.81
GSMUA_Achr9P22570_001	Banana	plastid	11.82	17.73
GSMUA_Achr9P18840_001	Banana	plastid	14.7	13.29

Protein Annotations

EnsemblPlants:GSMUA_Achr6P20450_001	EnsemblPlants:GSMUA_Achr6T20450_001	EnsemblPlantsGene:GSMUA_Achr6G20450_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44309	PANTHER:PTHR44309:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000295358A	UniProt:M0T8P3	MapMan:35.1	:	:	:

Description

Putative F-box/LRR-repeat protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G20450_001]

Coordinates

chr6:+:15017543..15021279

Molecular Weight (calculated)

72286.4 Da

IEP (calculated)

7.813

GRAVY (calculated)

0.230

Length

660 amino acids

Sequence
(BLAST)

001: MKRAHQQHRH QPFDSILAAL SVDLLIQILE RVDDPGDRKA WRLVCRDFLR AEALHRRGLR VLRLEALPGL LRRYAACLDL LDLSACPGLG DHALATALFA
101: GAGSWLLKSV SLSRASGVGW RGLAALAAAC PRLESVDLSH CVGVGDREAA ALAAAEGLRM LRLDKCLRVT DVGLAKLAVG CPALENLSIK WCLEISDIGI
201: ELLAKKCRDL RVLDISYLKI TNSSVKSISS LGKLEVLSMV GCSNIDDEGL QFLDNGSNSL RSIDVSRCDN VTASGLTSVI EGHMCLQKLN VGDCFPELAP
301: LFLSKLNGLK DSLTVLILDG FQVSASSLKI IGVNCKNLSE IGLSKCKWVT DEGISELAAG CVNLMSIDLT CCRMLTDKAL MAIGEHNKKL VCLRLESCSL
401: ITDKGLEYIG TGCPKLEEID LTDCPITDTA MKYLSRCWEL MILKLGLCDK ISSEGLVHIA SNCQNLCELD LYRCIEVTDD GLAAIATGCS KLQKLNLCYC
501: IQITDRGMKH LSCLEDLRDL ELRGLHHVTS LGVTSIAIGC RRLTELDLKR CNLVDNVGLC ALAQYTGNLR QINISYCPVS SMGLCKLLGT LKCLQDVKLV
601: HLTHVPVERL ELALRAYGGQ LKKLKLFIGL RDLLSPWLIQ MLHARRCRIR WVDKPLVFSP

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.