Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- extracellular 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88253 | Canola | cytosol | 86.29 | 86.56 |
| CDX80608 | Canola | cytosol | 86.14 | 86.41 |
| Bra009931.1-P | Field mustard | cytosol | 86.14 | 86.41 |
| CDY53337 | Canola | cytosol | 85.67 | 86.07 |
| Bra036607.1-P | Field mustard | cytosol | 85.67 | 86.07 |
| CDY19741 | Canola | cytosol | 80.84 | 84.12 |
| VIT_14s0060g01970.t01 | Wine grape | cytosol, plastid | 60.59 | 60.5 |
| KRH68483 | Soybean | cytosol | 58.41 | 58.5 |
| KRG96764 | Soybean | cytosol | 57.63 | 57.72 |
| Solyc01g099970.2.1 | Tomato | extracellular | 51.71 | 53.63 |
| PGSC0003DMT400063732 | Potato | cytosol | 53.43 | 53.51 |
| GSMUA_Achr6P20450_001 | Banana | cytosol | 50.16 | 48.79 |
| Zm00001d041635_P002 | Maize | cytosol | 50.31 | 48.72 |
| KXG23663 | Sorghum | cytosol | 50.0 | 48.49 |
| Zm00001d023825_P001 | Maize | cytosol | 49.69 | 48.33 |
| Os12t0552700-01 | Rice | cytosol, peroxisome | 28.04 | 48.26 |
| GSMUA_Achr11P... | Banana | cytosol | 49.07 | 48.02 |
| TraesCS5A01G091800.2 | Wheat | cytosol | 48.75 | 47.35 |
| TraesCS5B01G097800.2 | Wheat | cytosol | 48.6 | 47.2 |
| TraesCS5D01G103900.3 | Wheat | cytosol | 48.75 | 47.0 |
| Zm00001d048695_P001 | Maize | cytosol | 46.73 | 46.3 |
| KXG29052 | Sorghum | plastid | 46.73 | 45.45 |
| HORVU5Hr1G024060.1 | Barley | cytosol, plastid | 48.44 | 36.89 |
| AT5G01720.1 | Thale cress | vacuole | 38.16 | 36.84 |
| AT5G23340.1 | Thale cress | cytosol | 18.07 | 28.64 |
| AT3G58530.1 | Thale cress | cytosol | 13.24 | 24.08 |
| AT4G15475.1 | Thale cress | cytosol | 22.59 | 23.77 |
| AT3G07550.2 | Thale cress | cytosol | 14.49 | 23.54 |
| AT2G25490.1 | Thale cress | plastid | 21.18 | 21.66 |
| AT5G25350.1 | Thale cress | cytosol | 20.41 | 21.03 |
| AT1G77000.1 | Thale cress | cytosol | 11.68 | 20.83 |
| AT1G21410.1 | Thale cress | cytosol | 11.21 | 20.0 |
| AT5G67250.1 | Thale cress | cytosol | 15.89 | 19.35 |
| AT3G50080.1 | Thale cress | cytosol | 15.42 | 18.97 |
| AT1G47056.1 | Thale cress | cytosol, plastid | 15.26 | 18.92 |
| AT4G07400.1 | Thale cress | nucleus | 15.73 | 18.23 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:832858 | ProteinID:AED93744.1 | EMBL:AK117239 | ArrayExpress:AT5G27920 |
| EnsemblPlantsGene:AT5G27920 | RefSeq:AT5G27920 | TAIR:AT5G27920 | RefSeq:AT5G27920-TAIR-G | EnsemblPlants:AT5G27920.1 | TAIR:AT5G27920.1 |
| EMBL:BT005940 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_568502.1 | PFAM:PF13516 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR44309 | PANTHER:PTHR44309:SF2 | UniProt:Q8GZ31 | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI0000060DC0 | SEG:seg | : | : | : |
Description
At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
Coordinates
chr5:-:9941734..9944942
Molecular Weight (calculated)
70576.8 Da
IEP (calculated)
7.811
GRAVY (calculated)
0.238
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.