Factsheet for PGSC0003DMT400063732

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099970.2.1	Tomato	extracellular	92.04	95.31
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	63.34	63.14
KRH68483	Soybean	cytosol	58.97	58.97
KRG96764	Soybean	cytosol	58.66	58.66
CDY19741	Canola	cytosol	52.11	54.13
Bra036607.1-P	Field mustard	cytosol	53.82	53.99
CDY53337	Canola	cytosol	53.35	53.52
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	53.51	53.43
CDX80608	Canola	cytosol	53.2	53.28
CDX88253	Canola	cytosol	52.89	52.97
Bra009931.1-P	Field mustard	cytosol	52.73	52.81
GSMUA_Achr6P20450_001	Banana	cytosol	49.14	47.73
Zm00001d023825_P001	Maize	cytosol	48.83	47.42
GSMUA_Achr11P...	Banana	cytosol	48.52	47.41
Zm00001d041635_P002	Maize	cytosol	48.83	47.21
KXG23663	Sorghum	cytosol	48.52	46.98
Os12t0552700-01	Rice	cytosol, peroxisome	27.15	46.65
TraesCS5A01G091800.2	Wheat	cytosol	47.89	46.44
TraesCS5B01G097800.2	Wheat	cytosol	47.74	46.29
TraesCS5D01G103900.3	Wheat	cytosol	48.05	46.25
Zm00001d048695_P001	Maize	cytosol	46.33	45.83
KXG29052	Sorghum	plastid	45.71	44.39
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	38.85	37.44
HORVU5Hr1G024060.1	Barley	cytosol, plastid	47.43	36.06
PGSC0003DMT400029999	Potato	cytosol	19.66	30.14
PGSC0003DMT400079115	Potato	cytosol	24.8	26.19
PGSC0003DMT400074998	Potato	cytosol	13.73	25.43
PGSC0003DMT400053176	Potato	cytosol	14.66	24.1
PGSC0003DMT400008648	Potato	cytosol	6.24	23.95
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	12.64	23.75
PGSC0003DMT400007545	Potato	cytosol	22.78	22.92
PGSC0003DMT400094835	Potato	cytosol	8.74	22.86
PGSC0003DMT400040977	Potato	nucleus	22.46	21.52
PGSC0003DMT400079445	Potato	cytosol, nucleus, peroxisome	21.37	21.34
PGSC0003DMT400089433	Potato	mitochondrion	14.82	20.7
PGSC0003DMT400042949	Potato	cytosol	17.47	20.29
PGSC0003DMT400064250	Potato	mitochondrion	16.85	19.64
PGSC0003DMT400053918	Potato	cytosol	16.38	19.13
PGSC0003DMT400091765	Potato	cytosol	17.78	16.15

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102587135	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M1CB43	PFAM:PF13516	EnsemblPlantsGene:PGSC0003DMG400024768	PGSC:PGSC0003DMG400024768	EnsemblPlants:PGSC0003DMT400063732	PANTHER:PTHR44309
PANTHER:PTHR44309:SF2	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000295C8E4	RefSeq:XP_006344698.1	SEG:seg

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400024768]

Coordinates

chr1:-:77665021..77672030

Molecular Weight (calculated)

70912.2 Da

IEP (calculated)

7.884

GRAVY (calculated)

0.198

Length

641 amino acids

Sequence
(BLAST)

001: MDSALFVLNE DLLIRILSFI THDSDRKAFR LVCKAFLRVD SFHRTHLRIL RPEFITTLFS KFPRIYSLDL SVCPQINDGA VSMLVGYGLP DWSRRLRRLV
101: LSRTTGLKSA GLEILMKSCP VLESIDVSYC WGFGDREAAA LSFGGSLRDV KLDRCLGLTD VGLAKVAIGC QCLEKLSLMW CIEITDLGID FLSKKCTQLK
201: QLDISYLKVT SVSLHSISSM EKLELLAMVG CGIVDDEGLH YLGKGCPSLQ ALDVSRCDRL SSSALAFLIN GHPSMLQVYA SHCFHEFPTK VIQGLKDLKN
301: LKKLILDGAP VSESFFKIIN FNCKYLVEIG LGKCKGVTDK GILQLVSGGV NLNILNLTCC SELTDNAISA ITDSCRSVLC LKLECCNLLT EKSLYHLGLH
401: CSLLEELDLT DCFGVNDTGL YYLSKCTKLI CLKLGLCTNI TDKGLYCVAR NCSEIRELDL YRCQGIGDDG LYALSSGCKR MQKLNLSYCS EVTDRGIECL
501: GHLPELSDLE MRSLLNVTGT GLTALATGCK RLAELDVKDC TSIDDSGFMA LAYYSRNLQQ INLSHCAISD VGLCMVMGNL TRLQDAKLVN LYNVSTNGFE
601: VALRASRVRL KKVKLIASLR LHLTPDVVKT LKARGCRIRW D

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.