CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036607.1-P	Field mustard	cytosol	98.44	98.44
CDY19741	Canola	cytosol	92.49	95.79
CDX88253	Canola	cytosol	88.42	88.28
CDX80608	Canola	cytosol	87.64	87.5
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	86.07	85.67
KRH68483	Soybean	cytosol	58.69	58.5
VIT_14s0060g01970.t01	Wine grape	cytosol, plastid	58.84	58.48
KRG96764	Soybean	cytosol	57.75	57.57
Solyc01g099970.2.1	Tomato	extracellular	51.8	53.47
PGSC0003DMT400063732	Potato	cytosol	53.52	53.35
Os12t0552700-01	Rice	cytosol, peroxisome	28.8	49.33
GSMUA_Achr6P20450_001	Banana	cytosol	50.08	48.48
Zm00001d041635_P002	Maize	cytosol	50.08	48.27
KXG23663	Sorghum	cytosol	49.61	47.89
GSMUA_Achr11P...	Banana	cytosol	48.83	47.56
Zm00001d023825_P001	Maize	cytosol	48.98	47.42
TraesCS5A01G091800.2	Wheat	cytosol	48.67	47.05
TraesCS5B01G097800.2	Wheat	cytosol	48.51	46.9
Zm00001d048695_P001	Maize	cytosol	47.42	46.76
TraesCS5D01G103900.3	Wheat	cytosol	48.67	46.7
KXG29052	Sorghum	plastid	47.57	46.06
HORVU5Hr1G024060.1	Barley	cytosol, plastid	48.67	36.89
CDX80753	Canola	endoplasmic reticulum	37.56	35.5
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	37.56	35.5
CDX88014	Canola	cytosol	18.15	28.64
CDY46953	Canola	cytosol	18.0	27.98
CDY40798	Canola	cytosol	17.68	27.49
CDY06032	Canola	cytosol	14.24	25.78
CDX71945	Canola	cytosol	14.08	25.5
CDY28039	Canola	cytosol	14.71	24.1
CDY09760	Canola	cytosol	23.47	23.92
CDX90588	Canola	cytosol	23.47	23.85
CDY35942	Canola	cytosol	14.55	23.54
CDX88336	Canola	cytosol	11.74	23.15
CDY58588	Canola	extracellular	4.69	22.73
CDY29091	Canola	plastid	5.95	21.97
CDX88173	Canola	cytosol	20.97	21.54
CDX79184	Canola	cytosol	12.05	21.45
CDX87090	Canola	cytosol	20.66	21.43
CDX87549	Canola	cytosol	11.89	21.41
CDY35358	Canola	cytosol	20.81	21.35
CDX76980	Canola	cytosol	19.72	21.04
CDY19807	Canola	cytosol	20.19	20.94
CDX68067	Canola	cytosol	11.74	20.89
CDX80503	Canola	cytosol	20.19	20.77
CDY58589	Canola	extracellular	4.23	20.61
CDY67973	Canola	plasma membrane	11.58	20.44
CDX96592	Canola	cytosol	11.58	20.44
CDX68575	Canola	cytosol	16.28	20.35
CDY45764	Canola	cytosol, peroxisome, plastid	18.47	20.24
CDX83114	Canola	cytosol	15.65	20.12
CDY25663	Canola	plastid	15.96	19.84
CDY43846	Canola	plastid	15.81	19.65
CDY18646	Canola	cytosol	15.34	18.7
CDX81326	Canola	cytosol	15.18	18.51
CDY12824	Canola	nucleus	15.81	9.27
CDY01426	Canola	cytosol	15.65	9.23

Protein Annotations

EnsemblPlants:CDY53337	EnsemblPlantsGene:GSBRNA2T00010469001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44309
PANTHER:PTHR44309:SF2	PFAM:PF13516	ProteinID:CDY53337	ProteinID:CDY53337.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EB2BC4	UniProt:A0A078ITK4	MapMan:35.1	:	:

Description

BnaCnng24950DBnaCnng24950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITK4]

Coordinates

chrLK033190:-:10482..13717

Molecular Weight (calculated)

70395.2 Da

IEP (calculated)

7.950

GRAVY (calculated)

0.134

Length

639 amino acids

Sequence
(BLAST)

001: MPLSPSILSV LSEDLLVRVY GFLDPPCRKK WRLVSKEFHR VDSLSRTSIR ILRVEFLPAL LSNYPNLSSL DLSVCPKLDD DVVLRLASHG AVSIKSLNLS
101: RATALRARGL ETLARLCRGL ERVDVSHCWG FGDREAAALS VAAGLREVRM DKCLSLSDVG LARIVLGCSN LSKISLKWCM EISDLGIDLL CKKCKDLRSL
201: DVSYLKITND SIRSIALLPK LEVLEMVNCP LVDDDGLQYL ENGCPSLQEI DVTRCERVSL SGVVSIVRGH PDLQHLKASH CVSEVSLSFL HNIKALKHLK
301: TLWIDGARVS DSSLLTLSSS CRSLTDIGVS KCVGVTDIGV VGLARNCINL KTLNLACCGF VTDAAISAVA QSCRNLETLK LESCHMITEK GLQSLGCYSK
401: DLQELDLTDC YGVNDRGLEY ISKCSNLLRL KLGLCTNISD KGMFHIGSKC SKLLELDLYR CGGFGDDGLA AISRGCKSLN RLIISYCGEL TDAGVEQTRQ
501: LEHLSHLELR GLKNITGAGL AAVACGCKKL DYLDLKKCEN IDDSGFWALA YFARNLRQIN LCYCSVSDTA LCMLMSNLSR VQDVDLVNLN RVTVEGSEFA
601: LRACCNRLKK LKLFAPLRFL LSSELLEMLH ARGCRIRWD

Best Arabidopsis Sequence Match ( AT5G27920.1 )
(BLAST)

001: MSTSPSILSV LSEDLLVRVY ECLDPPCRKT WRLISKDFLR VDSLTRTTIR ILRVEFLPTL LFKYPNLSSL DLSVCPKLDD DVVLRLALDG AISTLGIKSL
101: NLSRSTAVRA RGLETLARMC HALERVDVSH CWGFGDREAA ALSSATGLRE LKMDKCLSLS DVGLARIVVG CSNLNKISLK WCMEISDLGI DLLCKICKGL
201: KSLDVSYLKI TNDSIRSIAL LVKLEVLDMV SCPLIDDGGL QFLENGSPSL QEVDVTRCDR VSLSGLISIV RGHPDIQLLK ASHCVSEVSG SFLKYIKGLK
301: HLKTIWIDGA HVSDSSLVSL SSSCRSLMEI GLSRCVDVTD IGMISLARNC LNLKTLNLAC CGFVTDVAIS AVAQSCRNLG TLKLESCHLI TEKGLQSLGC
401: YSMLVQELDL TDCYGVNDRG LEYISKCSNL QRLKLGLCTN ISDKGIFHIG SKCSKLLELD LYRCAGFGDD GLAALSRGCK SLNRLILSYC CELTDTGVEQ
501: IRQLELLSHL ELRGLKNITG VGLAAIASGC KKLGYLDVKL CENIDDSGFW ALAYFSKNLR QINLCNCSVS DTALCMLMSN LSRVQDVDLV HLSRVTVEGF
601: EFALRACCNR LKKLKLLAPL RFLLSSELLE TLHARGCRIR WD

Arabidopsis Description

At5g27920 [Source:UniProtKB/TrEMBL;Acc:Q8GZ31]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.