CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23340.1	CDX68112	AT1G75950.1	21798944
AT5G23340.1	CDX73212	AT1G75950.1	21798944
AT5G23340.1	CDX80590	AT1G75950.1	21798944
AT5G23340.1	CDX85931	AT1G75950.1	21798944
AT5G23340.1	CDX87650	AT1G75950.1	21798944
AT5G23340.1	CDY13521	AT1G75950.1	21798944
AT5G23340.1	CDY39073	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88014	Canola	cytosol	68.1	98.02
AT5G23340.1	Thale cress	cytosol	63.46	91.36
CDY40798	Canola	cytosol	62.09	88.08
CDY46953	Canola	cytosol	61.41	87.1
VIT_10s0071g00310.t01	Wine grape	cytosol	51.11	72.16
KRG90608	Soybean	cytosol	49.23	68.66
PGSC0003DMT400029999	Potato	cytosol	49.06	68.42
KRH36149	Soybean	cytosol	49.06	68.26
Solyc04g008980.2.1	Tomato	cytosol	48.89	67.86
GSMUA_Achr8P13910_001	Banana	mitochondrion	35.51	58.47
GSMUA_Achr5P19410_001	Banana	cytosol	42.37	58.12
TraesCS6D01G216400.1	Wheat	cytosol	40.48	56.59
TraesCS6B01G262900.1	Wheat	cytosol	40.31	56.35
TraesCS6A01G234100.2	Wheat	cytosol	40.14	56.12
HORVU6Hr1G059950.1	Barley	cytosol	39.97	55.88
Os02t0636400-01	Rice	cytosol	18.52	54.0
Zm00001d051219_P001	Maize	cytosol	38.42	53.72
KXG30697	Sorghum	cytosol	37.22	51.42
KRH16153	Soybean	cytosol	21.1	49.6
CDY29091	Canola	plastid	14.58	49.13
CDY58589	Canola	extracellular	5.32	23.66
CDY58588	Canola	extracellular	5.15	22.73
CDX88336	Canola	cytosol	12.52	22.53
CDX68067	Canola	cytosol	13.21	21.45
CDX79184	Canola	cytosol	13.21	21.45
CDX87549	Canola	cytosol	13.04	21.41
CDX96592	Canola	cytosol	13.21	21.27
CDY67973	Canola	plasma membrane	13.21	21.27
CDY28039	Canola	cytosol	14.07	21.03
CDY35942	Canola	cytosol	14.24	21.01
CDX71945	Canola	cytosol	12.01	19.83
CDY06032	Canola	cytosol	11.84	19.55
CDY09760	Canola	cytosol	20.58	19.14
CDY19741	Canola	cytosol	20.24	19.12
CDX90588	Canola	cytosol	20.41	18.92
CDY53337	Canola	cytosol	20.24	18.47
CDX83114	Canola	cytosol	15.61	18.31
CDX88253	Canola	cytosol	19.9	18.12
CDX80608	Canola	cytosol	19.73	17.97
CDX68575	Canola	cytosol	15.61	17.81
CDY25663	Canola	plastid	15.44	17.51
CDY43846	Canola	plastid	15.27	17.32
CDX81326	Canola	cytosol	15.27	16.98
CDX87090	Canola	cytosol	17.84	16.88
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	19.38	16.72
CDY18646	Canola	cytosol	14.92	16.6
CDX80503	Canola	cytosol	17.67	16.59
CDY19807	Canola	cytosol	17.5	16.56
CDX88173	Canola	cytosol	17.5	16.4
CDY35358	Canola	cytosol	17.5	16.37
CDX80753	Canola	endoplasmic reticulum	18.7	16.12
CDX76980	Canola	cytosol	16.12	15.69
CDY12824	Canola	nucleus	15.78	8.44
CDY01426	Canola	cytosol	15.44	8.31

Protein Annotations

EnsemblPlants:CDY45764	EnsemblPlantsGene:GSBRNA2T00082687001	Gene3D:1.20.120.1630	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR45191	PFAM:PF13516	ProteinID:CDY45764	ProteinID:CDY45764.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EDBBBA	UniProt:A0A078I8N6	MapMan:35.1	:	:

Description

BnaC02g42180DBnaC02g42180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8N6]

Coordinates

chrLK032635:+:201816..204987

Molecular Weight (calculated)

64389.1 Da

IEP (calculated)

6.566

GRAVY (calculated)

0.141

Length

583 amino acids

Sequence
(BLAST)

001: MTEIFSDTTG IRQLSQMLLS LTFFHTSEYI LAIAIHGASN VSLTSLLISK RYALAMLLAL VEHLTEITLF PELKQQHTWW VSTVLFTVVV WRFFAERIAY
101: EECFLNQSFG VEYVEYAESV ASVDQTTQAL SQRVFIAFPC TTGSVTREKR KTSAEKERFR LRLGLILTRI RFDLVCLDMA SVCVNDALTD DELRWILSRL
201: DTEKDKEVFG LVCKRWLYLQ STDRKKLAAR AGPHMLGRLA SRFTRIVELD LSQSVSRSFY PGVTDSDLAV IAEGFKCLRV LNLHTCKGIT DTGLASIGRC
301: LSLLQFLDVS YCRKLSDKGL SAVAEGCHDL RALHLAGCRF ITDETLKSLS QRCRDLEALG LQGCTNITDS GLADLVKGCR KIKALDINKC SNVGDAGVSS
401: VAKACASSLK TLKLLDCYKV GDESVSSLSQ FCKNLETLII GGCRDISDES IVLLADSCRD GLKNLRMDWC LNVTDSSLTC VLKQCKSLEA LDIGCCEEVT
501: DNAFQGLGSE DVLGLKVLKV SNCPKITVAG IGKLLEKCSS LEYLDVRSLP HVTEVRCSEA GLEFPACCKV NFSGSLTEPD VLL

Best Arabidopsis Sequence Match ( AT5G23340.1 )
(BLAST)

001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL

Arabidopsis Description

At5g23340/MKD15_20 [Source:UniProtKB/TrEMBL;Acc:Q9FMW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.