Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18646 | Canola | cytosol | 95.99 | 95.99 |
| AT5G67250.1 | Thale cress | cytosol | 86.26 | 85.77 |
| CDX83114 | Canola | cytosol | 69.08 | 72.84 |
| CDX68575 | Canola | cytosol | 69.27 | 71.04 |
| KRH77049 | Soybean | cytosol | 56.11 | 56.32 |
| KRH28425 | Soybean | cytosol | 56.3 | 56.08 |
| KRH04530 | Soybean | cytosol | 56.68 | 55.1 |
| KRH57971 | Soybean | cytosol | 57.63 | 54.02 |
| Solyc02g092990.1.1 | Tomato | plastid | 55.92 | 53.27 |
| PGSC0003DMT400064250 | Potato | mitochondrion | 55.53 | 52.91 |
| VIT_07s0129g01110.t01 | Wine grape | plastid | 56.68 | 52.75 |
| PGSC0003DMT400053918 | Potato | cytosol | 54.96 | 52.46 |
| Solyc03g044220.1.1 | Tomato | cytosol | 54.58 | 52.09 |
| CDY25663 | Canola | plastid | 50.0 | 50.97 |
| CDY43846 | Canola | plastid | 50.0 | 50.97 |
| GSMUA_Achr3P28280_001 | Banana | plastid | 47.52 | 50.51 |
| GSMUA_Achr9P11380_001 | Banana | cytosol | 42.56 | 49.78 |
| GSMUA_Achr8P15580_001 | Banana | cytosol | 37.98 | 48.77 |
| OQU89081 | Sorghum | cytosol | 47.71 | 47.62 |
| GSMUA_Achr9P22570_001 | Banana | plastid | 39.69 | 47.27 |
| GSMUA_Achr4P12920_001 | Banana | plastid | 45.99 | 47.16 |
| GSMUA_Achr2P05250_001 | Banana | cytosol | 43.51 | 46.91 |
| Zm00001d019677_P001 | Maize | cytosol | 46.18 | 46.1 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 46.18 | 45.92 |
| TraesCS5D01G166300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 45.99 | 45.73 |
| TraesCS5B01G158800.1 | Wheat | plastid | 45.99 | 45.73 |
| TraesCS2D01G358900.1 | Wheat | mitochondrion, plastid | 38.36 | 45.58 |
| Os04t0505700-01 | Rice | cytosol, mitochondrion | 35.88 | 45.3 |
| Zm00001d003103_P001 | Maize | plastid | 43.7 | 44.04 |
| HORVU5Hr1G050420.1 | Barley | plastid | 45.99 | 43.66 |
| KXG26667 | Sorghum | plastid | 38.55 | 43.16 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 43.89 | 42.51 |
| CDY01426 | Canola | cytosol | 87.79 | 42.47 |
| CDY12824 | Canola | nucleus | 87.02 | 41.83 |
| Zm00001d025808_P001 | Maize | plastid | 43.13 | 41.39 |
| Zm00001d025812_P001 | Maize | plastid | 43.13 | 41.39 |
| HORVU0Hr1G005070.1 | Barley | plastid | 43.51 | 40.86 |
| GSMUA_Achr9P18840_001 | Banana | plastid | 48.66 | 34.93 |
| CDX88014 | Canola | cytosol | 16.98 | 21.98 |
| CDY46953 | Canola | cytosol | 17.18 | 21.9 |
| CDY40798 | Canola | cytosol | 16.98 | 21.65 |
| CDY06032 | Canola | cytosol | 12.98 | 19.26 |
| CDX71945 | Canola | cytosol | 12.98 | 19.26 |
| CDX80503 | Canola | cytosol | 21.37 | 18.04 |
| CDY35942 | Canola | cytosol | 13.55 | 17.97 |
| CDY28039 | Canola | cytosol | 13.36 | 17.95 |
| CDY09760 | Canola | cytosol | 21.37 | 17.86 |
| CDX88173 | Canola | cytosol | 21.18 | 17.85 |
| CDX90588 | Canola | cytosol | 21.37 | 17.81 |
| CDX68067 | Canola | cytosol | 11.83 | 17.27 |
| CDX87549 | Canola | cytosol | 11.64 | 17.18 |
| CDY35358 | Canola | cytosol | 20.42 | 17.18 |
| CDY19807 | Canola | cytosol | 20.04 | 17.05 |
| CDX87090 | Canola | cytosol | 20.04 | 17.05 |
| CDX79184 | Canola | cytosol | 11.64 | 16.99 |
| CDX88336 | Canola | cytosol | 10.5 | 16.98 |
| CDY67973 | Canola | plasma membrane | 11.45 | 16.57 |
| CDX96592 | Canola | cytosol | 11.45 | 16.57 |
| CDX76980 | Canola | cytosol | 18.7 | 16.36 |
| CDY58589 | Canola | extracellular | 4.01 | 16.03 |
| CDY58588 | Canola | extracellular | 4.01 | 15.91 |
| CDX88253 | Canola | cytosol | 19.27 | 15.78 |
| CDY19741 | Canola | cytosol | 18.51 | 15.72 |
| CDX80608 | Canola | cytosol | 19.08 | 15.62 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 16.98 | 15.27 |
| CDY53337 | Canola | cytosol | 18.51 | 15.18 |
| CDX80753 | Canola | endoplasmic reticulum | 18.89 | 14.64 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 18.7 | 14.5 |
| Zm00001d037295_P001 | Maize | mitochondrion | 6.3 | 13.52 |
| CDY29091 | Canola | plastid | 4.39 | 13.29 |
| Zm00001d028552_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 5.53 | 13.06 |
| Zm00001d039723_P001 | Maize | cytosol, extracellular, plastid | 5.15 | 11.59 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EnsemblPlants:CDX81326 | ProteinID:CDX81326 | ProteinID:CDX81326.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00134862001 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44356 | PANTHER:PTHR44356:SF3 | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EE9069 | SEG:seg | : | : | : |
Description
BnaC09g07370D
Coordinates
chrLK031824:+:1014022..1015801
Molecular Weight (calculated)
57004.2 Da
IEP (calculated)
8.206
GRAVY (calculated)
-0.101
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQATSSTAE STGREIDLRL TSPVIVASRE ESMDSGNSPA ASDRDYTEDL PGECLAHVFQ YLGAGDRKRC SLVCKRWLFV DGQNRHRLSL DARDEIFSFL
101: PSMFDRFDSV TKLALRCDRK SLSLSDEALV MISVRCSNLT RVKLRGCREI TDLGMVEFAK NCGNLKKLSV GSCNFGAKGV NAMLENCKLL EELSVKRLRG
201: IHEAPELVCS SSSLRSVCLK ELVNGQVFEP LVANTRTLKT LKIIRCLGDW DKVLKTIGEG DSSLSEIHLE RLQVSDFGLS AVSKCSKVET LHIVKTPECS
301: NYGLIDVAER CKLLRKLHID GWRTNRIGDE GLMAVAKHCL NLQELVLIGV NATHMSLAAI ASNCQKLERL ALCGSGTIGD TEIACIAKKC GALRKFCIKG
401: CPVSDLGIEA LAVGCPNLVK LKVKKCKVVT GEIGEWLRER RRTLVVCMDG DGSEATVAPD GEVETVMGEP RVGQAGGAAE VGSGNGGGSR LAMIRSKFGF
501: LGGRNLITCT FRRWSHNDNG TSYT
101: PSMFDRFDSV TKLALRCDRK SLSLSDEALV MISVRCSNLT RVKLRGCREI TDLGMVEFAK NCGNLKKLSV GSCNFGAKGV NAMLENCKLL EELSVKRLRG
201: IHEAPELVCS SSSLRSVCLK ELVNGQVFEP LVANTRTLKT LKIIRCLGDW DKVLKTIGEG DSSLSEIHLE RLQVSDFGLS AVSKCSKVET LHIVKTPECS
301: NYGLIDVAER CKLLRKLHID GWRTNRIGDE GLMAVAKHCL NLQELVLIGV NATHMSLAAI ASNCQKLERL ALCGSGTIGD TEIACIAKKC GALRKFCIKG
401: CPVSDLGIEA LAVGCPNLVK LKVKKCKVVT GEIGEWLRER RRTLVVCMDG DGSEATVAPD GEVETVMGEP RVGQAGGAAE VGSGNGGGSR LAMIRSKFGF
501: LGGRNLITCT FRRWSHNDNG TSYT
001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST
Arabidopsis Description
SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.