Factsheet for Solyc03g044220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053918	Potato	cytosol	95.63	95.63
Solyc02g092990.1.1	Tomato	plastid	73.59	73.45
Solyc04g078490.1.1	Tomato	cytosol	57.38	58.99
VIT_07s0129g01110.t01	Wine grape	plastid	57.74	56.31
AT5G67250.1	Thale cress	cytosol	53.55	55.79
CDY18646	Canola	cytosol	52.09	54.58
CDX81326	Canola	cytosol	52.09	54.58
CDX83114	Canola	cytosol	49.36	54.53
KRH77049	Soybean	cytosol	51.73	54.41
Bra037120.1-P	Field mustard	cytosol	52.09	54.37
KRH28425	Soybean	cytosol	52.09	54.37
Bra029994.1-P	Field mustard	cytosol	50.46	54.21
CDX68575	Canola	cytosol	49.91	53.62
GSMUA_Achr3P28280_001	Banana	plastid	47.91	53.35
AT3G50080.1	Thale cress	cytosol	50.27	52.87
KRH04530	Soybean	cytosol	51.37	52.32
KRH57971	Soybean	cytosol	51.73	50.8
GSMUA_Achr9P11380_001	Banana	cytosol	40.44	49.55
GSMUA_Achr9P22570_001	Banana	plastid	39.71	49.55
GSMUA_Achr2P05250_001	Banana	cytosol	43.72	49.38
GSMUA_Achr8P15580_001	Banana	cytosol	36.61	49.26
GSMUA_Achr4P12920_001	Banana	plastid	45.17	48.53
Zm00001d019677_P001	Maize	cytosol	44.99	47.05
OQU89081	Sorghum	cytosol	44.81	46.86
TraesCS5A01G161400.1	Wheat	cytosol, plastid	44.44	46.3
TraesCS5B01G158800.1	Wheat	plastid	44.08	45.92
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	44.08	45.92
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.25	45.12
Os04t0505700-01	Rice	cytosol, mitochondrion	33.52	44.34
HORVU5Hr1G050420.1	Barley	plastid	44.26	44.02
KXG26667	Sorghum	plastid	36.98	43.38
Zm00001d003103_P001	Maize	plastid	40.8	43.08
TraesCS2A01G359900.1	Wheat	cytosol	41.71	42.33
Zm00001d025808_P001	Maize	plastid	41.71	41.94
Zm00001d025812_P001	Maize	plastid	41.71	41.94
HORVU0Hr1G005070.1	Barley	plastid	41.53	40.86
GSMUA_Achr9P18840_001	Banana	plastid	44.26	33.29
CDY01426	Canola	cytosol	52.64	26.69
CDY12824	Canola	nucleus	52.46	26.42
Solyc04g008980.2.1	Tomato	cytosol	15.48	20.24
Solyc12g009560.1.1	Tomato	cytosol	21.49	18.52
Solyc06g007680.1.1	Tomato	cytosol	13.48	18.5
Solyc04g063380.2.1	Tomato	cytosol	12.2	18.41
Solyc08g060810.2.1	Tomato	plastid	22.22	18.35
Solyc06g049010.1.1	Tomato	plastid	20.22	17.9
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	20.22	17.32
Solyc06g005380.2.1	Tomato	cytosol	10.75	17.05
Solyc10g076290.1.1	Tomato	cytosol	20.77	16.89
Solyc06g054440.2.1	Tomato	mitochondrion	16.39	16.82
Solyc06g030610.1.1	Tomato	cytosol	8.01	16.06
Solyc01g099970.2.1	Tomato	extracellular	18.03	15.99
Solyc06g030620.1.1	Tomato	cytosol	5.28	14.43
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.65	13.96
Zm00001d037295_P001	Maize	mitochondrion	5.83	13.11
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.46	12.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4BG41
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44356
PANTHER:PTHR44356:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc03g044220.1	EnsemblPlants:Solyc03g044220.1.1
UniParc:UPI000276817D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:8491437..8493086

Molecular Weight (calculated)

59755.3 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.031

Length

549 amino acids

Sequence
(BLAST)

001: MGQSSSAHGF SPTNSNYPHH RCSGTDHSQS EFFYPTQSDE GHFPISQPCE NRDYTDGLPD ECLALIFQSL SSGDRKRSSL VCRRWLLVEG ISRHRLSLNA
101: KSEIIPDIPT IFSRFDSVTK LALRCDRRSV SINDEALILI SQRCVNLTRL KLRGCRDITD LGMACLAKNC EKLKKFSCGS CMFGAEGMNA LLINSISLEE
201: LSVKRLRCMN HTISTEPISI GSNAACLLKS ICLKELYNGQ CFGPLIMGSK NLKTLKLLRC LGDWDRVLET IASRENHLVE IHLERVQVSD IGLGAISKFS
301: DLEILHLVKA PECTDAGVVD VARRCKLLRK VHIDGWRTNR IGDVGLSAIG ENSINLKELV IMGLNPTVTS LLAIASNCQK LERLALCGSE SIGDAEVTCI
401: ATKCMALKKL CIKGCEVTDE GIVSFAWGCP NLVKIKVKKC KNVTGEVADL LRARRGSLTV NLDVGEVDVE VVDGSASDGG ALEEGIEFPA IARIVPILGA
501: GGVVDIDTPS TSNFGRSSAS NTRIGFLGGR GFVACTFRRW SNGNANENL

Best Arabidopsis Sequence Match ( AT5G67250.1 )
(BLAST)

001: MGQAPSSTAE SNGRELDLRL WSPVIVAGGE SMAVGNVVDR DFTGDLPDEC LAHVFQFLGA GDRKRCSLVC KRWLLVDGQS RHRLSLDAKD EISSFLTSMF
101: NRFDSVTKLA LRCDRKSVSL SDEALAMISV RCLNLTRVKL RGCREITDLG MEDFAKNCKN LKKLSVGSCN FGAKGVNAML EHCKLLEELS VKRLRGIHEA
201: AELIHLPDDA SSSSLRSICL KELVNGQVFE PLLATTRTLK TLKIIRCLGD WDKVLQMIAN GKSSLSEIHL ERLQVSDIGL SAISKCSNVE TLHIVKTPEC
301: SNFGLIYVAE RCKLLRKLHI DGWRTNRIGD EGLLSVAKHC LNLQELVLIG VNATHMSLAA IASNCEKLER LALCGSGTIG DTEIACIARK CGALRKFCIK
401: GCPVSDRGIE ALAVGCPNLV KLKVKKCKVV TGEIGDWLRE QRRTLVVSMD GDETEAVVVV DGEVETVVEE PRVAQAGGIV AEIGSSNGGG GSRLAMIRSK
501: LGFLAGRNLV TCTFRRWSHN DNASSST

Arabidopsis Description

SKIP2F-box protein SKIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.