Factsheet for GSMUA_Achr8P15580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11380_001	Banana	cytosol	77.45	70.54
Os04t0505700-01	Rice	cytosol, mitochondrion	49.75	48.92
GSMUA_Achr3P28280_001	Banana	plastid	56.13	46.45
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	49.26	45.58
GSMUA_Achr2P05250_001	Banana	cytosol	54.17	45.47
PGSC0003DMT400008648	Potato	cytosol	18.14	44.31
Zm00001d003103_P001	Maize	plastid	55.64	43.65
KXG26667	Sorghum	plastid	50.0	43.59
GSMUA_Achr4P12920_001	Banana	plastid	53.92	43.05
TraesCS2A01G359900.1	Wheat	cytosol	55.64	41.96
GSMUA_Achr9P22570_001	Banana	plastid	45.1	41.82
Zm00001d025808_P001	Maize	plastid	54.9	41.03
Zm00001d025812_P001	Maize	plastid	54.66	40.84
HORVU0Hr1G005070.1	Barley	plastid	55.15	40.32
AT1G47056.1	Thale cress	cytosol, plastid	49.02	38.61
AT5G67250.1	Thale cress	cytosol	49.51	38.33
KRH28425	Soybean	cytosol	49.26	38.21
CDX83114	Canola	cytosol	46.32	38.03
Solyc04g078490.1.1	Tomato	cytosol	49.75	38.02
CDX81326	Canola	cytosol	48.77	37.98
VIT_18s0001g09940.t01	Wine grape	plastid	50.25	37.89
KRH15408	Soybean	plastid	50.98	37.89
CDY18646	Canola	cytosol	48.53	37.79
Bra037120.1-P	Field mustard	cytosol	48.53	37.64
CDY43846	Canola	plastid	47.3	37.55
Bra032213.1-P	Field mustard	plastid	47.3	37.55
Solyc02g092990.1.1	Tomato	plastid	50.49	37.45
PGSC0003DMT400064250	Potato	mitochondrion	50.49	37.45
KRH77049	Soybean	cytosol	47.79	37.36
CDY25663	Canola	plastid	47.06	37.35
KRH05631	Soybean	plastid	51.23	37.12
CDX68575	Canola	cytosol	46.32	36.99
Bra029994.1-P	Field mustard	cytosol	46.08	36.79
Solyc03g044220.1.1	Tomato	cytosol	49.26	36.61
VIT_07s0129g01110.t01	Wine grape	plastid	50.49	36.59
PGSC0003DMT400053918	Potato	cytosol	49.02	36.43
KRH04530	Soybean	cytosol	47.55	35.99
KRH57971	Soybean	cytosol	48.04	35.06
AT3G50080.1	Thale cress	cytosol	44.61	34.87
KRH52037	Soybean	cytosol	34.07	34.41
AT4G07400.1	Thale cress	nucleus	46.32	34.12
GSMUA_Achr9P18840_001	Banana	plastid	54.66	30.55
PGSC0003DMT400091765	Potato	cytosol	48.53	28.05
CDY01426	Canola	cytosol	50.25	18.93
CDY12824	Canola	nucleus	50.25	18.81
GSMUA_Achr8P28940_001	Banana	cytosol	17.4	18.68
KRH61346	Soybean	cytosol	30.39	17.77
GSMUA_Achr2P17760_001	Banana	cytosol	14.46	16.67
GSMUA_Achr4P30680_001	Banana	cytosol	25.74	16.1
GSMUA_Achr6P18620_001	Banana	cytosol	14.46	16.08
GSMUA_Achr10P...	Banana	cytosol	13.97	16.06
Zm00001d037295_P001	Maize	mitochondrion	9.56	15.98
GSMUA_Achr6P05220_001	Banana	cytosol	25.49	15.9
GSMUA_Achr5P19410_001	Banana	cytosol	16.42	15.76
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	8.33	15.32
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	24.51	15.29
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	24.51	14.97
GSMUA_Achr3P22880_001	Banana	cytosol	23.28	14.84
GSMUA_AchrUn_...	Banana	cytosol	13.24	14.67
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	22.79	13.92
GSMUA_Achr8P13910_001	Banana	mitochondrion	12.01	13.84
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	7.84	13.73
GSMUA_Achr6P20450_001	Banana	cytosol	21.32	13.18
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	23.04	13.17
GSMUA_Achr7P22290_001	Banana	cytosol	23.04	13.13
GSMUA_Achr11P...	Banana	cytosol	20.59	12.8

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G15580_001	EnsemblPlants:GSMUA_Achr8P15580_001	EnsemblPlants:GSMUA_Achr8T15580_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0TQR1
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44356	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002965AFB	:	:	:	:

Description

Putative F-box protein At1g47056 [Source:GMGC_GENE;Acc:GSMUA_Achr8G15580_001]

Coordinates

chr8:+:13210872..13212263

Molecular Weight (calculated)

44000.0 Da

IEP (calculated)

8.062

GRAVY (calculated)

0.158

Length

408 amino acids

Sequence
(BLAST)

001: MPTSRPQRDH TLDLPDDCLA LVVGSLGPRD RNRCALVCRR WLAVEARSRC RLLRACHRVT DLGMSALASH CPALRRFACS SCSFGPAGID AVLRGCPFLE
101: DLSFKRLRGL ADAVPQAVCF PASSALRSLC LKDLYNAQCF TSVIAGSPSL RTLKIIRCSG EWDPVLQKIA GRVPKLAEVH LEKLQVADRG LVALTSCLAL
201: EALHLVKTPE CTDAGVAAIA DNCCMLRKIR IDGWRTNRIG DYGLMAIARG CPQLQELVLV GINPTALIIE HIVSSCRSLE RLALCGCKTI GDAEIAHIAT
301: KCTALKKLCI KGCPVSDRGL EALARGCPSL INVRMKRCPR VTWEGVEWLM AARGGSFAVS LDAVTLQEPD VSMSEGGMQE SGIEELASLT EHIVTLDLPS
401: SSNDGSTL

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.