Factsheet for GSMUA_Achr3P22880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02152	Soybean	cytosol	58.91	64.55
VIT_05s0020g02400.t01	Wine grape	cytosol	60.94	63.83
KRH20947	Soybean	cytosol, nucleus, peroxisome	60.0	63.26
PGSC0003DMT400079115	Potato	cytosol	59.69	62.93
Solyc06g054440.2.1	Tomato	mitochondrion	52.19	62.43
AT4G15475.1	Thale cress	cytosol	55.16	57.87
KRH50979	Soybean	cytosol	31.09	56.7
TraesCS4D01G148000.1	Wheat	cytosol	54.22	55.52
CDX90588	Canola	cytosol	54.53	55.48
CDY09760	Canola	cytosol	54.22	55.34
Bra012785.1-P	Field mustard	cytosol	54.06	55.1
KRH11333	Soybean	cytosol	33.59	54.99
Zm00001d007640_P001	Maize	cytosol	53.44	54.46
EES08900	Sorghum	cytosol	53.12	53.54
TraesCS4A01G142500.3	Wheat	plastid	51.25	52.15
Os11t0641200-01	Rice	cytosol	26.41	47.21
Os10t0148800-01	Rice	cytosol	30.16	38.76
GSMUA_Achr5P19410_001	Banana	cytosol	18.91	28.47
GSMUA_Achr8P13910_001	Banana	mitochondrion	14.84	26.84
GSMUA_Achr8P28940_001	Banana	cytosol	15.62	26.32
GSMUA_Achr10P...	Banana	cytosol	14.06	25.35
GSMUA_Achr11P...	Banana	cytosol	25.78	25.15
GSMUA_Achr6P20450_001	Banana	cytosol	25.16	24.39
GSMUA_Achr6P18620_001	Banana	cytosol	13.91	24.25
GSMUA_AchrUn_...	Banana	cytosol	13.75	23.91
GSMUA_Achr8P15580_001	Banana	cytosol	14.84	23.28
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	25.78	23.11
GSMUA_Achr7P22290_001	Banana	cytosol	25.62	22.91
GSMUA_Achr2P17760_001	Banana	cytosol	12.66	22.88
GSMUA_Achr9P11380_001	Banana	cytosol	15.47	22.1
GSMUA_Achr4P30680_001	Banana	cytosol	21.88	21.47
GSMUA_Achr6P05220_001	Banana	cytosol	21.88	21.41
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	22.19	21.26
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	21.72	21.25
GSMUA_Achr2P05250_001	Banana	cytosol	15.78	20.78
GSMUA_Achr3P28280_001	Banana	plastid	15.31	19.88
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	20.0	19.16
GSMUA_Achr4P12920_001	Banana	plastid	14.38	18.0
GSMUA_Achr9P22570_001	Banana	plastid	12.34	17.95
GSMUA_Achr9P18840_001	Banana	plastid	15.94	13.97

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G22880_001	EnsemblPlants:GSMUA_Achr3P22880_001	EnsemblPlants:GSMUA_Achr3T22880_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0SH04
PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR45517	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000294EF38	:	:	:	:

Description

F-box/LRR-repeat protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22880_001]

Coordinates

chr3:+:23732085..23742132

Molecular Weight (calculated)

69894.5 Da

IEP (calculated)

7.879

GRAVY (calculated)

0.197

Length

640 amino acids

Sequence
(BLAST)

001: MKGCDLVNTF LPDELIMEIF RHVEAKSDRD ACSLVCRKWR RLERACRRTI RIGASGTADQ LVDLVVRRFT GLRNVYIDER LPVTTNKQQG QNNFVFFIVT
101: ESIRKNIQLG QANKVLVILL FGVHTLPKPN HATEEIYVEN ELERFCLSDA GLALLAKSCK GLEKLSFIWC SSITSLGLTT VAENCKFLKS VDLQGCYVGD
201: KGLIALGQNC KQLEDLNLRF CEGLTDTGLV GFAQSHGSSL KSLGIAACAW ISDVSLQAVA SHCKFLENLS LDSELMRNTG VISVAQGCRS LKALKLQCVN
301: ISDESLQAVG SYCSLLEQLA LYSFQRFTDR QLSLLPHLPT YLYAIGNGCK KLRDLTLSDC YLLSDQSLEA IARGCTKLTN LEINGCHNIG TSGLEYIGRL
401: CLGLVELSLL YCPRMGNSAL REVGKGCSLL KALHLVDCSS INDDGISAIA QGCRSLRKLH VRRCYEVGDK GIISVGENCK LLADLSLRFC DRVGDAALVA
501: VAQGCSLKHL NVSGCHLITD TGLTAIARGC PDLVNLDISV LQSIGDMALA ELGHGCPLLK EIVLSHCRQI TDVGLAHLVT GCSRLETCHM VYCPLVTGAG
601: VATVVSSCAN IKKVLVERWK VSQRTLRRAY SVLSFLCVEL

Best Arabidopsis Sequence Match ( AT4G15475.1 )
(BLAST)

001: MRGHDRINNC LPEELILEIF RRLESKPNRD ACSLVCKRWL SLERFSRTTL RIGASFSPDD FISLLSRRFL YITSIHVDER ISVSLPSLSP SPKRKRGRDS
101: SSPSSSKRKK LTDKTHSGAE NVESSSLTDT GLTALANGFP RIENLSLIWC PNVSSVGLCS LAQKCTSLKS LDLQGCYVGD QGLAAVGKFC KQLEELNLRF
201: CEGLTDVGVI DLVVGCSKSL KSIGVAASAK ITDLSLEAVG SHCKLLEVLY LDSEYIHDKG LIAVAQGCHR LKNLKLQCVS VTDVAFAAVG ELCTSLERLA
301: LYSFQHFTDK GMRAIGKGSK KLKDLTLSDC YFVSCKGLEA IAHGCKELER VEINGCHNIG TRGIEAIGKS CPRLKELALL YCQRIGNSAL QEIGKGCKSL
401: EILHLVDCSG IGDIAMCSIA KGCRNLKKLH IRRCYEIGNK GIISIGKHCK SLTELSLRFC DKVGNKALIA IGKGCSLQQL NVSGCNQISD AGITAIARGC
501: PQLTHLDISV LQNIGDMPLA ELGEGCPMLK DLVLSHCHHI TDNGLNHLVQ KCKLLETCHM VYCPGITSAG VATVVSSCPH IKKVLIEKWK VTERTTRRAG
601: SVISYLCMDL

Arabidopsis Description

FBL4F-box/LRR-repeat protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.